Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_J19
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   203   5e-53
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF067942-9|AAG45572.1|  347|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  203 bits (496), Expect = 5e-53
 Identities = 93/126 (73%), Positives = 107/126 (84%)
 Frame = +3

Query: 39  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 218
           M+LN +YPATG QK FEV +E KLR+F+EKRM  EV  D LGDEWKGYV+R+ GGNDKQG
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query: 219 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 398
           FPMKQG+LTN RVRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG  E
Sbjct: 61  FPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGE 120

Query: 399 IPGLTD 416
           I GLTD
Sbjct: 121 IEGLTD 126



 Score = 37.9 bits (84), Expect = 0.004
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +1

Query: 427 PRRLGPKRASKIRKLFN 477
           PR+LGPKRASKIRKLFN
Sbjct: 130 PRKLGPKRASKIRKLFN 146


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -2

Query: 424 TSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRGL*QEWPFDIKRRT 254
           T+P+ +P  +  P  T T AKT + ++T   +T     +P+      + PFD  + T
Sbjct: 274 TTPTTTPTTTTTPTTTTTTAKTTK-STTTTTKTTKTTSTPTTTTTTPKTPFDTSKCT 329


>Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 180 NLSIRRLEDLHQLQRPYAFHRRY 112
           N+ +RRLE+L  ++RP   H R+
Sbjct: 227 NMVVRRLEELGAIERPLNLHVRF 249


>AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 180 NLSIRRLEDLHQLQRPYAFHRRY 112
           N+ +RRLE+L  ++RP   H R+
Sbjct: 227 NMVVRRLEELGAIERPLNLHVRF 249


>AF067942-9|AAG45572.1|  347|Caenorhabditis elegans Hypothetical
           protein ZK6.2 protein.
          Length = 347

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 256 TRLLVRTPCFIGKPCLSLPPATRR 185
           TR +    CF+G+ C   PP TR+
Sbjct: 37  TRTMPIKKCFLGENCFERPPFTRK 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,723,108
Number of Sequences: 27780
Number of extensions: 241886
Number of successful extensions: 544
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)