Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_J17
         (135 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.06c |bqt2|mug18, rec23|bouquet formation protein Bqt2|S...    24   2.4  
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch...    24   3.2  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    23   4.2  
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    23   7.3  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    23   7.3  
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom...    23   7.3  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    22   9.7  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    22   9.7  

>SPAC1002.06c |bqt2|mug18, rec23|bouquet formation protein
          Bqt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 118

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 12 ECVFSTATAPAAGILRWSIHYVRTRF 89
          +C F   T P+A I  W +H    +F
Sbjct: 5  KCAFFDETVPSALIALWQLHNGEAKF 30


>SPAC25B8.15c |||wybutosine biosynthesis protein
           Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 237

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 52  SCGGAFTMYVRGSNS 96
           SC G  ++YV+G+NS
Sbjct: 56  SCSGRISVYVQGANS 70


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 26  YRHRPCRWDLAVEHSL 73
           YRH+P  W  ++ H+L
Sbjct: 328 YRHQPPAWHNSIRHNL 343


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 21  FSTATAPAAGILRWSIHYV 77
           F   T   +GIL WSI YV
Sbjct: 215 FEKCTGFFSGILEWSIVYV 233


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 38   PCRWDLAVEHSLCT 79
            PC  D  ++H+LCT
Sbjct: 961  PCPTDEEIQHTLCT 974


>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 86  PRTYIVNAPPQDPSGRGGGGTEDT 15
           PRT ++N PP+  S   G  T  T
Sbjct: 292 PRTDVINEPPRRYSHANGVTTSGT 315


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +2

Query: 47  WDLAVEHSLCTYAVLTRTLKWAE 115
           W +A   ++C  AVL     W E
Sbjct: 743 WQVAYNENVCVAAVLRNNRFWIE 765


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 86  PRTYIVNAPPQDPSGR 39
           P T   NAPP   SGR
Sbjct: 420 PTTLSTNAPPSPSSGR 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 585,366
Number of Sequences: 5004
Number of extensions: 7762
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 25
effective length of database: 2,237,378
effective search space used: 42510182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)