Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_J17
(135 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0318 - 16620177-16620582,16620686-16620765,16620873-166212... 29 0.39
03_05_1075 - 30174725-30175363 28 0.91
04_04_1182 + 31531426-31531702,31533741-31533997,31534672-315348... 28 1.2
04_04_0126 + 22952577-22952871,22952912-22953519,22954125-229545... 28 1.2
01_06_1069 + 34275823-34276167 27 1.6
09_04_0655 - 19254911-19254983,19255078-19255441,19255816-192559... 27 2.1
02_02_0489 + 10869482-10871218 27 2.1
03_05_0540 + 25375261-25376931 27 2.8
02_02_0189 - 7626848-7626865,7626995-7627270 27 2.8
05_04_0060 + 17576427-17578781 24 3.3
08_01_1081 + 11058119-11059756 26 3.7
08_01_0650 + 5617578-5618633,5619580-5619735,5619816-5620058 26 3.7
05_05_0175 + 22966151-22967614 26 3.7
09_06_0274 + 21967740-21968230,21968411-21968550,21968711-219689... 26 4.9
05_03_0685 + 16992899-16993570 26 4.9
03_05_0980 - 29384046-29384117,29384901-29384998,29385656-293857... 26 4.9
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92... 26 4.9
01_03_0046 - 11937619-11938260 26 4.9
10_08_0132 + 15087274-15087797,15089544-15089732,15090048-150901... 25 6.4
05_04_0206 + 19034259-19035462,19036870-19037045,19037752-190379... 25 6.4
03_06_0398 + 33629421-33629633,33629960-33630063,33630140-336301... 25 6.4
02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060 25 6.4
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 25 8.5
06_03_0046 - 15852653-15854560 25 8.5
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293... 25 8.5
04_03_0075 + 10726807-10727721,10728756-10729496 25 8.5
03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685... 25 8.5
02_05_1258 + 35290183-35290198,35290292-35290599,35290844-352909... 25 8.5
01_05_0116 - 18294960-18295078,18295967-18296102,18297167-182972... 25 8.5
>09_04_0318 -
16620177-16620582,16620686-16620765,16620873-16621213,
16621298-16621559
Length = 362
Score = 29.5 bits (63), Expect = 0.39
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Frame = -2
Query: 131 LPSGSPLPISA----FELEPRTYIVNAPPQDPSGRGGGGTED 18
LP P P S+ E R + VN PP G GGGG E+
Sbjct: 75 LPWPPPPPPSSESRHLEASTRGFDVNRPPSSGGGGGGGGAEE 116
>03_05_1075 - 30174725-30175363
Length = 212
Score = 28.3 bits (60), Expect = 0.91
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 134 VLPSGSPLPISAFELEPRTYIVNAPPQDPSGRG 36
+ P G+P P FE P + PP P+ RG
Sbjct: 84 IAPPGAPAPPRLFEPLPEPLLPQPPPPAPARRG 116
>04_04_1182 +
31531426-31531702,31533741-31533997,31534672-31534818,
31535974-31536111
Length = 272
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 104 SAFELEPRTYIVNAPPQDPSGRGGGGTEDTLSPR 3
+ +E+ P +V A + P G GGGG + PR
Sbjct: 32 AGWEVRPSGMVVQAREEGPGGGGGGGGGMGIPPR 65
>04_04_0126 +
22952577-22952871,22952912-22953519,22954125-22954596,
22954882-22954955,22955559-22955937,22956659-22956711
Length = 626
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 65 APPQDPSGRGGGGTEDTLSPR 3
APP P G GGG ED+ + R
Sbjct: 7 APPHPPRGGGGGSPEDSSTAR 27
>01_06_1069 + 34275823-34276167
Length = 114
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 49 GSCGGAFTMYVRGSNSNAEMG-RGEPDGR 132
G CGG + VRGS + A + R P GR
Sbjct: 56 GGCGGPYAAMVRGSTATAAVSLRSAPLGR 84
>09_04_0655 -
19254911-19254983,19255078-19255441,19255816-19255901,
19256737-19257410
Length = 398
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 116 PLPISAFELEPRTYIVNAPPQDPSGRGGGGTED 18
PL + AFE+ T APP P+G ED
Sbjct: 146 PLLLLAFEVRRATTAAAAPPPPPTGTDDDDVED 178
>02_02_0489 + 10869482-10871218
Length = 578
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 95 ELEPRTYIVNAPPQDPSGRGGGGTED 18
E E R V PPQ PSGRG +++
Sbjct: 37 EEEERESPVAPPPQKPSGRGAASSDE 62
>03_05_0540 + 25375261-25376931
Length = 556
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 125 SGSPLPISAFELEPRTYIVNAPPQDPSGRGGGG 27
+G P++A +E Y+ +A P+ P G GG G
Sbjct: 56 TGILAPLAAVTVEV-VYLASAAPEGPGGGGGAG 87
>02_02_0189 - 7626848-7626865,7626995-7627270
Length = 97
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 74 IVNAPPQDPSGRGGGG 27
+V+ PP P+G GGGG
Sbjct: 14 LVSLPPSSPAGGGGGG 29
>05_04_0060 + 17576427-17578781
Length = 784
Score = 23.8 bits (49), Expect(2) = 3.3
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 50 PSGRGGGGTEDTLSP 6
P G GGGG E+ SP
Sbjct: 80 PGGGGGGGGEERASP 94
Score = 21.0 bits (42), Expect(2) = 3.3
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -2
Query: 89 EPRTYIVNAPPQDPSG 42
E RTYIV P D G
Sbjct: 49 EARTYIVLVEPPDADG 64
>08_01_1081 + 11058119-11059756
Length = 545
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 74 IVNAPPQDPSGRGGGGTEDTLSP 6
+V +PP S GGGG ED P
Sbjct: 16 VVVSPPDPKSHHGGGGDEDVGRP 38
>08_01_0650 + 5617578-5618633,5619580-5619735,5619816-5620058
Length = 484
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -2
Query: 50 PSGRGGGGTEDTLS 9
PSG GGGG ED LS
Sbjct: 20 PSGGGGGGGEDRLS 33
>05_05_0175 + 22966151-22967614
Length = 487
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2
Query: 62 PPQDPSGRGGGG 27
PP+ P GRGGGG
Sbjct: 143 PPRPPPGRGGGG 154
>09_06_0274 +
21967740-21968230,21968411-21968550,21968711-21968905,
21969524-21969652,21970063-21970218,21970507-21970589,
21972229-21972433,21972601-21972805,21973059-21973194,
21973990-21974164,21974470-21974528,21974642-21974716,
21974804-21974920,21975010-21975080,21975170-21975473,
21975721-21976086,21976404-21976514
Length = 1005
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 8/30 (26%)
Frame = +1
Query: 52 SCGGAFTMYVR--------GSNSNAEMGRG 117
+CGG FTM + G+NSN E+GRG
Sbjct: 256 ACGGFFTMALTSDGQLWSWGANSNFELGRG 285
>05_03_0685 + 16992899-16993570
Length = 223
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = -2
Query: 77 YIVNAP-PQDPSGRGGGGTED 18
++V+ P P D SG GGGG D
Sbjct: 97 FVVHVPTPSDNSGDGGGGAGD 117
>03_05_0980 -
29384046-29384117,29384901-29384998,29385656-29385725,
29386260-29386391,29386823-29387083,29387266-29387336,
29387520-29387587,29388676-29388869
Length = 321
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 86 PRTYIVNAPPQDPSGRGGGG 27
P + V+A + PSG GGGG
Sbjct: 26 PGCFTVSAADEGPSGSGGGG 45
>02_01_0125 +
920128-920392,920491-921839,921921-922084,922340-922370,
922534-922565,922730-923060,923210-923713
Length = 891
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 83 RTYIVNAPPQDPSGRGGGGT 24
R ++ + PP+DP+ R GG T
Sbjct: 804 RKFLRHEPPEDPTPRPGGST 823
>01_03_0046 - 11937619-11938260
Length = 213
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = -2
Query: 110 PISAFELEPRTYIVN-APPQDPSGRGGGGTEDTLSPR 3
P + F P T PP SG GGGG+ L PR
Sbjct: 41 PSAHFADAPETQTQTPTPPLSASGGGGGGSFRWLGPR 77
>10_08_0132 +
15087274-15087797,15089544-15089732,15090048-15090186,
15090454-15090594,15091420-15091569,15091908-15092011,
15092258-15092432,15092714-15092823,15092906-15093073,
15093180-15093345,15093771-15094049,15094445-15094543,
15094619-15094676,15095145-15095336,15095693-15095724,
15096023-15096117,15096321-15096426
Length = 908
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 65 APPQDPSGRGGGGT 24
APPQ GRGGG T
Sbjct: 816 APPQPVPGRGGGAT 829
>05_04_0206 +
19034259-19035462,19036870-19037045,19037752-19037975,
19038133-19038914,19039337-19039494
Length = 847
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -2
Query: 128 PSGSPLPISAFELEPRT-YIVNAPPQDP 48
P +P P FE EPRT +V PP P
Sbjct: 280 PVAAPAPQEEFEEEPRTPEMVTPPPSLP 307
>03_06_0398 +
33629421-33629633,33629960-33630063,33630140-33630194,
33630293-33630341,33630427-33630599,33630731-33630808,
33630923-33630985,33631400-33631525,33631667-33631795
Length = 329
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -2
Query: 125 SGSPLPISAFELEPRTYIVNAPP-QDPSGRGGGGTEDTLSPR 3
+G +P +A E + + P +D SG G GG+ED+ R
Sbjct: 77 AGCAVPSAAAEGKSKRKTSGGPSGEDSSGSGDGGSEDSSERR 118
>02_04_0180 +
20696258-20698398,20698691-20698871,20698998-20699060
Length = 794
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 83 RTYIVNAPPQDPSGRGGGG 27
R+ + PP P GRGGGG
Sbjct: 7 RSRLPPPPPPPPFGRGGGG 25
>07_03_0562 +
19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 122 GSPLPISAFELEPRTYIVNAPPQDPS 45
G P P+ + E++PR + V A PQ S
Sbjct: 622 GVPGPLESPEIKPRLFGVTAEPQQRS 647
>06_03_0046 - 15852653-15854560
Length = 635
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 56 QDPSGRGGGGTEDTLS 9
QDP G GGGG T+S
Sbjct: 515 QDPLGNGGGGESWTIS 530
>04_04_1104 -
30928475-30928501,30929008-30929110,30929287-30929340,
30929803-30929895,30930063-30930140,30930416-30930527,
30930618-30930756,30930823-30930910,30930984-30931079,
30931675-30931781,30931874-30932009,30932089-30932186,
30932954-30933047,30933132-30933301,30933749-30933819,
30936066-30936194,30936552-30936654,30936764-30936907,
30937123-30937245,30937482-30937563,30939044-30939120,
30939261-30939315,30939365-30939443,30939544-30939620,
30939739-30939869,30939947-30940120,30940245-30940310,
30940937-30941572
Length = 1113
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -2
Query: 134 VLPSGSPLPISAFELEPRTYIVNAPPQDPSGRGGGG 27
++P P S+ P APP S RGGGG
Sbjct: 49 LMPKPPPSSSSSAAATPAPPAPAAPPPPTSRRGGGG 84
>04_03_0075 + 10726807-10727721,10728756-10729496
Length = 551
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 5 EERVCLQYRHRPCRWDLAVEHSLCTYAVLTRTLKWAEGSRMV 130
E + L+Y R WD A +++C+ +L R + EG ++
Sbjct: 393 ENQRMLKYESRRHIWDEAYLYTVCSDGLLRRCVPTEEGFMII 434
>03_05_0967 +
29265465-29266214,29267718-29267944,29268428-29268557,
29268651-29268719,29268803-29268946,29269775-29270011,
29270897-29270998,29271131-29271396,29271766-29273410,
29274449-29275018
Length = 1379
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 62 PPQDPSGRGGGGTEDTLSP 6
PP SGRG GG + TL P
Sbjct: 306 PPWGGSGRGFGGLDFTLPP 324
>02_05_1258 +
35290183-35290198,35290292-35290599,35290844-35290939,
35291067-35291144,35291224-35291400,35292738-35292806,
35292917-35293093
Length = 306
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 49 GSCGGAFTMYVRGSNSNAEMGRGEPDGRT 135
G GG + RG +S GRG GRT
Sbjct: 19 GRSGGGGRGFGRGGDSGGRGGRGRGGGRT 47
>01_05_0116 -
18294960-18295078,18295967-18296102,18297167-18297275,
18298027-18298070,18298305-18298372,18298625-18298695,
18299068-18300005
Length = 494
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -2
Query: 128 PSGSPLPISAFELEPRTYIVNAPPQDPSGRGGGGTEDTLSP 6
P PLP+ L PR N+P P G G TLSP
Sbjct: 9 PRPLPLPLPRSPLLPRFTQYNSPDDPPRGL-RGARRLTLSP 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.311 0.133 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,759,905
Number of Sequences: 37544
Number of extensions: 79509
Number of successful extensions: 387
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 14,793,348
effective HSP length: 25
effective length of database: 13,854,748
effective search space used: 263240212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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