Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_J17
         (135 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L18983-1|AAA90974.1|  979|Homo sapiens tyrosine phosphatase prot...    27   8.1  
BC070053-1|AAH70053.1|  950|Homo sapiens PTPRN protein protein.        27   8.1  
AK124252-1|BAC85817.1|  234|Homo sapiens protein ( Homo sapiens ...    27   8.1  
AF108461-1|AAF31756.1| 1134|Homo sapiens ubinuclein protein.           27   8.1  
AF108460-1|AAF31755.1| 1134|Homo sapiens ubinuclein protein.           27   8.1  
AC114803-2|AAY24038.1|  979|Homo sapiens unknown protein.              27   8.1  
AB209368-1|BAD92605.1|  824|Homo sapiens protein tyrosine phosph...    27   8.1  

>L18983-1|AAA90974.1|  979|Homo sapiens tyrosine phosphatase
           protein.
          Length = 979

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 59  PQDPSGRGGGGTEDTLSP 6
           PQ P G+GG G   +LSP
Sbjct: 158 PQPPVGKGGAGASSSLSP 175


>BC070053-1|AAH70053.1|  950|Homo sapiens PTPRN protein protein.
          Length = 950

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 59  PQDPSGRGGGGTEDTLSP 6
           PQ P G+GG G   +LSP
Sbjct: 158 PQPPVGKGGAGASSSLSP 175


>AK124252-1|BAC85817.1|  234|Homo sapiens protein ( Homo sapiens
          cDNA FLJ42258 fis, clone TKIDN2010934. ).
          Length = 234

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +3

Query: 3  TRREC-VFSTATAPAAGILRWSIHY 74
          +RR+C +++TAT P    L W++H+
Sbjct: 4  SRRDCRMYATATGPGFSGLPWAVHH 28


>AF108461-1|AAF31756.1| 1134|Homo sapiens ubinuclein protein.
          Length = 1134

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 128  PSGSPLPISAFELEP--RTYIVNAPPQDPSGRGGGGTE 21
            P+  P+P SA +  P  +   + APP  P+G   GGT+
Sbjct: 945  PTSRPVPSSAGKKMPVSQKLTLVAPPGGPNGDSSGGTQ 982


>AF108460-1|AAF31755.1| 1134|Homo sapiens ubinuclein protein.
          Length = 1134

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 128  PSGSPLPISAFELEP--RTYIVNAPPQDPSGRGGGGTE 21
            P+  P+P SA +  P  +   + APP  P+G   GGT+
Sbjct: 945  PTSRPVPSSAGKKMPVSQKLTLVAPPGGPNGDSSGGTQ 982


>AC114803-2|AAY24038.1|  979|Homo sapiens unknown protein.
          Length = 979

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 59  PQDPSGRGGGGTEDTLSP 6
           PQ P G+GG G   +LSP
Sbjct: 158 PQPPVGKGGAGASSSLSP 175


>AB209368-1|BAD92605.1|  824|Homo sapiens protein tyrosine
           phosphatase, receptor type, N precursor variant protein.
          Length = 824

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 59  PQDPSGRGGGGTEDTLSP 6
           PQ P G+GG G   +LSP
Sbjct: 130 PQPPVGKGGAGASSSLSP 147


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.311    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,730,573
Number of Sequences: 237096
Number of extensions: 410007
Number of successful extensions: 872
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 76,859,062
effective HSP length: 25
effective length of database: 70,931,662
effective search space used: 1347701578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)