Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_J16
(512 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 52 4e-08
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 49 5e-07
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 36 0.005
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 29 0.54
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 27 2.2
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 26 3.8
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 25 5.0
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 25 6.7
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 25 8.8
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 25 8.8
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 25 8.8
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 8.8
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 52.4 bits (120), Expect = 4e-08
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Frame = +1
Query: 208 LRALNSNPTLATVXXXXXXXXXXXXXXX-IEEFLPIYSQAKKDKDQGCYEDFLECLKLYD 384
+R+L +PT A + EFL + ++ KD D E+ E K++D
Sbjct: 38 MRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTMMARKMKDTDNE--EEVREAFKVFD 95
Query: 385 KNENGLMLGAELTHTLLALGEKLNDSEVAEITKD 486
K+ NG + ELTH L +LGE+L+ EVA++ ++
Sbjct: 96 KDGNGYITVEELTHVLTSLGERLSQEEVADMIRE 129
Score = 25.4 bits (53), Expect = 5.0
Identities = 10/44 (22%), Positives = 25/44 (56%)
Frame = +1
Query: 355 DFLECLKLYDKNENGLMLGAELTHTLLALGEKLNDSEVAEITKD 486
+F E L+D++++G + EL + +LG+ +E+ ++ +
Sbjct: 13 EFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINE 56
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 48.8 bits (111), Expect = 5e-07
Identities = 28/92 (30%), Positives = 49/92 (53%)
Frame = +1
Query: 208 LRALNSNPTLATVXXXXXXXXXXXXXXXIEEFLPIYSQAKKDKDQGCYEDFLECLKLYDK 387
LRA NPTLA + +E+FL + ++ G E+F++ +++DK
Sbjct: 32 LRACGQNPTLAEITEIESTLPAEVD---MEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDK 88
Query: 388 NENGLMLGAELTHTLLALGEKLNDSEVAEITK 483
+ G++ EL + L +LGEKL++ E+ E+ K
Sbjct: 89 DATGMIGVGELRYVLTSLGEKLSNEEMDELLK 120
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 35.5 bits (78), Expect = 0.005
Identities = 15/49 (30%), Positives = 32/49 (65%)
Frame = +1
Query: 352 EDFLECLKLYDKNENGLMLGAELTHTLLALGEKLNDSEVAEITKDCMDP 498
E++++ +++DK+ +G + A+ + LGEKL+D+EV + ++ DP
Sbjct: 78 EEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEA-DP 125
Score = 32.3 bits (70), Expect = 0.044
Identities = 15/52 (28%), Positives = 31/52 (59%)
Frame = +1
Query: 352 EDFLECLKLYDKNENGLMLGAELTHTLLALGEKLNDSEVAEITKDCMDPEDE 507
++ E LYD +++GL+ + + L +LG + D+E+A+++ + D DE
Sbjct: 9 DEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNELGDAIDE 60
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 28.7 bits (61), Expect = 0.54
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 352 EDFLECLKLYDKNENGLMLGAELTHTLLALGEKLNDSEVAEITKD 486
+D E KL+D +++ + EL + ALG SEV +I +D
Sbjct: 37 QDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRD 81
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 439 LGEKLNDSEVAEITKDCMDPED 504
L EK+ D + I DC+DP+D
Sbjct: 777 LAEKVKDFQTMVILLDCLDPKD 798
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 97 RSPHKMSTHKNDIEGHPSPSPSMISRQRQIMPTT**SLRALNSNPTLATV 246
R P + S H+N I SPS + I + S+ ++SN +A +
Sbjct: 124 RIPKEASLHENSISSKESPSVTTSKHVATITKPSTSSIARMSSNARIAAI 173
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 25.4 bits (53), Expect = 5.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 322 AKKDKDQGCYEDFLECLKLYDKNENGLMLG 411
AK+D +GCY+ +E +Y + +G++ G
Sbjct: 1062 AKRDSHEGCYKTIVENAPVY-MHPSGVLFG 1090
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 21 PVKTSSEKLPGPFLSERLHETGREPTIT 104
PV + LP PF+S +T E T+T
Sbjct: 380 PVIAKTSALPNPFISFPSFQTSYETTVT 407
>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 24.6 bits (51), Expect = 8.8
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +1
Query: 13 HLSQLKRPAK--SYRAPSCLNVCMKPGGNQRSPHKMSTHKNDIEGHPSPSP 159
HLS L+ AK S PS + + P G + T HP+PSP
Sbjct: 219 HLSLLEPIAKMLSSLLPSNITAILYPDGRGLYQNPDGTFSPGSTDHPAPSP 269
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 24.6 bits (51), Expect = 8.8
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 337 DQGCYEDFLECLKLYDKNENGL 402
DQ C ED + +L + NGL
Sbjct: 305 DQNCSEDIIRMYRLMSRTPNGL 326
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 24.6 bits (51), Expect = 8.8
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 6 GRPSQPVKTSSEKLPGPFLSERLHETGREPTITTQNEHSQE 128
G QP + S+ P S ++ G EP + + N HS E
Sbjct: 213 GTLQQPQRAGSDTFPDLNTSSS-NQPGGEPNVASANTHSLE 252
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 24.6 bits (51), Expect = 8.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 195 NLVIFESTQL*PHISYRRETRWYKE 269
N VI + P +S R++ RWYK+
Sbjct: 912 NAVILLRDNVSPQLSDRKKLRWYKK 936
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,179
Number of Sequences: 5004
Number of extensions: 37362
Number of successful extensions: 102
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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