Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_J16
         (512 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   4.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   4.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   4.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.5  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   9.9  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   9.9  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 156 SIYDFEAKANHAYNLVIFESTQL*PHISYRRE 251
           ++ D +  +N  YN++    T+  PH  YR E
Sbjct: 93  AVKDNKLASNAGYNVIEQVRTKEEPHAPYRYE 124


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 156 SIYDFEAKANHAYNLVIFESTQL*PHISYRRE 251
           ++ D +  +N  YN++    T+  PH  YR E
Sbjct: 93  AVKDNKLASNAGYNVIEQVRTKEEPHAPYRYE 124


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 156 SIYDFEAKANHAYNLVIFESTQL*PHISYRRE 251
           ++ D +  +N  YN++    T+  PH  YR E
Sbjct: 93  AVKDNKLASNAGYNVIEQVRTKEEPHAPYRYE 124


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 160  MEKAKDALQCRSCECSFCVVIVGSLPVSCRRSDKKGPGNFSLDV 29
            ME   DAL     +  F +  + +L VS   S+ K  G   +DV
Sbjct: 1341 MEVPSDALIALYSQGLFSLSEIDNLDVSLDVSNPKNAGKKKIDV 1384


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +1

Query: 10  GHLSQLKRPAKSYRAPSCLNVCMKPGG 90
           GH S L  PA    + S L  C  P G
Sbjct: 41  GHCSHLCLPAPRINSKSPLLSCACPDG 67


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +1

Query: 10  GHLSQLKRPAKSYRAPSCLNVCMKPGG 90
           GH S L  PA    + S L  C  P G
Sbjct: 41  GHCSHLCLPAPRINSKSPLLSCACPDG 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,202
Number of Sequences: 438
Number of extensions: 2243
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)