Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_J15
(337 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 135 2e-33
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 134 5e-33
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 133 6e-33
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 3.1
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 3.1
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 24 5.4
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 24 5.4
SPAC17H9.07 |||signal recognition particle subunit Srp21 |Schizo... 24 5.4
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po... 24 5.4
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 24 5.4
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 24 7.1
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom... 24 7.1
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 24 7.1
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 23 9.4
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 23 9.4
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 23 9.4
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe... 23 9.4
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 135 bits (326), Expect = 2e-33
Identities = 60/84 (71%), Positives = 69/84 (82%)
Frame = +2
Query: 86 KLGGVYAPWPSTGPQKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPT 265
KL G YAP PS GP K RECLPL++FLRNRLKYAL G EV I+ QRLIKVDGKVRTD T
Sbjct: 22 KLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDST 81
Query: 266 YPAGFMDVVSIEKTNELFRVIYDV 337
+P GFMDV+S+EKT E FR++YD+
Sbjct: 82 FPTGFMDVISVEKTGEHFRLVYDI 105
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 134 bits (323), Expect = 5e-33
Identities = 59/84 (70%), Positives = 69/84 (82%)
Frame = +2
Query: 86 KLGGVYAPWPSTGPQKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPT 265
KL G YAP PS GP K RECLPL++FLRNRLKYAL G EV I+ QRLIKVDGKVRTD T
Sbjct: 22 KLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDST 81
Query: 266 YPAGFMDVVSIEKTNELFRVIYDV 337
+P GFMDV+S++KT E FR++YD+
Sbjct: 82 FPTGFMDVISVDKTGEHFRLVYDI 105
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 133 bits (322), Expect = 6e-33
Identities = 59/84 (70%), Positives = 69/84 (82%)
Frame = +2
Query: 86 KLGGVYAPWPSTGPQKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPT 265
KL G YAP PS GP K RECLPL++FLRNRLKYAL G EV I+ QRLI+VDGKVRTD T
Sbjct: 22 KLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVDGKVRTDST 81
Query: 266 YPAGFMDVVSIEKTNELFRVIYDV 337
+P GFMDV+S+EKT E FR++YD+
Sbjct: 82 FPTGFMDVISVEKTGEHFRLVYDI 105
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.0 bits (52), Expect = 3.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 152 LVIFLRNRLKYALTGNEVLKIV 217
L+ F+ RL++ LT E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 25.0 bits (52), Expect = 3.1
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -2
Query: 327 ITRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITS 151
I RN S+ MD + YV + + S + C + ++LP S YLS R ++ S
Sbjct: 273 ICRNYSY---MDILLSKKSKYVKKLEKYWSIYLSNCKKLGISTLPPSNYLSPNRAELES 328
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 24.2 bits (50), Expect = 5.4
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 137 RECLPLVIFLRNRLK-YALTGNEVLKIVKQRLIKV 238
+ECLP F +N+L Y L + VL++ K+R + V
Sbjct: 52 KECLPKFSF-QNKLDFYFLFSDRVLQLQKERKVLV 85
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 24.2 bits (50), Expect = 5.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 159 ITSGKHSRSFWGPVEGHGA 103
+TS S+ WG +EGH A
Sbjct: 420 VTSANLSKPAWGTLEGHKA 438
>SPAC17H9.07 |||signal recognition particle subunit Srp21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 24.2 bits (50), Expect = 5.4
Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 155 VIFLRNRLKYALTGNEVLKIVKQRLI--KVDGKVRTDPTYP 271
++ + N+L Y TGNE+ +Q ++ V + + +P+ P
Sbjct: 67 LLLIANKLSYVSTGNEIPPEPEQEVVASPVTEQKKAEPSAP 107
>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 24.2 bits (50), Expect = 5.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 262 GVSPHFPVHFDETLLHNLKHLIAGERVLEPISQED 158
G P P+ F + L +K G +L PI++ED
Sbjct: 120 GEQPTEPIDFADPPLPEVKRYGEGNWLLPPIAKED 154
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 24.2 bits (50), Expect = 5.4
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 125 PQKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG--KVRTD 259
P+ +CL + F+ + LT E ++KQ KV G VRTD
Sbjct: 234 PEGNSDCLSGISFVITGILETLTRQEATDLIKQYGGKVTGAPSVRTD 280
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 23.8 bits (49), Expect = 7.1
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -2
Query: 330 YITRNNSFVFSMDTTSINPAGYVGSVR--TFPSTLMRRCFTILSTS 199
++T +F ++ T+ G + S + T S ++ CFTI+STS
Sbjct: 611 FLTSVFNFPLALRNTATRILGIILSTKDSTRISEVLSSCFTIISTS 656
>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 23.8 bits (49), Expect = 7.1
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +2
Query: 128 QKLRECLPLVIF----LRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYP 271
Q L EC+ +++ LRNRL + + + + VD K + +PT P
Sbjct: 122 QNLLECVRILLGKKEELRNRLNFVHVSTDEVYGEQDENASVDEKSKLNPTSP 173
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 23.8 bits (49), Expect = 7.1
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +2
Query: 284 DVVSIEKTNELFRVIYDV 337
+V S+EK N++F + Y+V
Sbjct: 1718 NVSSLEKCNQIFSIFYEV 1735
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 23.4 bits (48), Expect = 9.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 270 GYVGSVRTFPSTLMRRCFTI 211
G +G TFP+ ++RR F +
Sbjct: 237 GIIGQTLTFPADVLRRRFQV 256
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 23.4 bits (48), Expect = 9.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 128 QKLRECLPLVIFLRNRLKYALTGNEVL 208
QKL+ + ++F+ NR KY ++G L
Sbjct: 392 QKLQIGINSIVFMTNRPKYLVSGTTPL 418
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 23.4 bits (48), Expect = 9.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 152 LVIFLRNRLKYALTGNEVLKIV 217
L+ F+ RL+ L+ +EVLKI+
Sbjct: 121 LIDFMNQRLQTRLSEHEVLKII 142
>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 23.4 bits (48), Expect = 9.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 249 CGLTPRTRRDLWTLYPLRKQMSY 317
CGL +R DL +++PL KQ +
Sbjct: 122 CGLFRVSRIDLHSVHPLIKQQDF 144
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,467,527
Number of Sequences: 5004
Number of extensions: 26666
Number of successful extensions: 86
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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