Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_J15
         (337 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   1.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   1.7  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   3.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   7.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   7.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   7.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   7.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   9.2  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    20   9.2  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 71  SMDVGKLGGVYAPW 112
           S+D+GK GG+ A W
Sbjct: 377 SLDLGKEGGLEAQW 390


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 173 RLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 274
           R K+ LTG   L   K RL+  +      P +P+
Sbjct: 182 RTKHRLTGETRLSATKGRLVITEPVGSVRPKFPS 215


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +2

Query: 215 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRVIYD 334
           VKQ ++ V+    TDP Y     + +  E ++ + ++ Y+
Sbjct: 145 VKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYN 184


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 191 TGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 292
           T +++    + R+ ++   VRT    P GF D+V
Sbjct: 733 TMSQMPPTAQPRMERLAEAVRTASQIPQGFKDLV 766


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -3

Query: 317 ITHLFSQWIQRP 282
           + HLF  W  RP
Sbjct: 667 LLHLFGSWSNRP 678


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -3

Query: 317 ITHLFSQWIQRP 282
           + HLF  W  RP
Sbjct: 667 LLHLFGSWSNRP 678


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -3

Query: 317 ITHLFSQWIQRP 282
           + HLF  W  RP
Sbjct: 667 LLHLFGSWSNRP 678


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 43  RNVATLKPLKHGCWKAGRRV 102
           R  A  KPLK+G  +  RR+
Sbjct: 139 RFCAITKPLKYGVKRTPRRM 158


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 244 PVHFDETLLHNLKHL 200
           P  F + L+HN+K L
Sbjct: 70  PTGFRKVLVHNVKEL 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,291
Number of Sequences: 438
Number of extensions: 1934
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)