Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_J14
         (473 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC008596-1|AAH08596.1|  336|Homo sapiens TMEM19 protein protein.       36   0.072
AK001798-1|BAA91918.1|  298|Homo sapiens protein ( Homo sapiens ...    36   0.072
AK223148-1|BAD96868.1|  336|Homo sapiens transmembrane protein 1...    34   0.22 
BC005063-1|AAH05063.1|  261|Homo sapiens retbindin protein.            33   0.38 
AY028917-1|AAK26169.1|  229|Homo sapiens retbindin protein.            33   0.38 
AB097001-1|BAC77354.1|  910|Homo sapiens putative NFkB activatin...    31   2.0  
BC054003-1|AAH54003.1| 1192|Homo sapiens RNASEN protein protein.       31   2.7  
AB012644-1|BAA32813.1|  227|Homo sapiens TAP1N protein.                30   4.7  

>BC008596-1|AAH08596.1|  336|Homo sapiens TMEM19 protein protein.
          Length = 336

 Score = 35.9 bits (79), Expect = 0.072
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +3

Query: 102 KQLMAS-RCVSK-AAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGT 275
           KQ  AS  C+S  AA+A   G+ WA   G  +SK    +++  +E   + T+GGVT+ G 
Sbjct: 165 KQYSASWMCLSLLAALACSAGDTWASEVGPVLSKSS-PRLITTWEKVPVGTNGGVTVVGL 223

Query: 276 RYIYLSGT 299
               L GT
Sbjct: 224 VSSLLGGT 231


>AK001798-1|BAA91918.1|  298|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10936 fis, clone OVARC1000959, weakly similar to
           HYPOTHETICAL PROTEIN MJ0933. ).
          Length = 298

 Score = 35.9 bits (79), Expect = 0.072
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +3

Query: 102 KQLMAS-RCVSK-AAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGT 275
           KQ  AS  C+S  AA+A   G+ WA   G  +SK    +++  +E   + T+GGVT+ G 
Sbjct: 165 KQYSASWMCLSLLAALACSAGDTWASEVGPVLSKSS-PRLITTWEKVPVGTNGGVTVVGL 223

Query: 276 RYIYLSGT 299
               L GT
Sbjct: 224 VSSLLGGT 231


>AK223148-1|BAD96868.1|  336|Homo sapiens transmembrane protein 19
           variant protein.
          Length = 336

 Score = 34.3 bits (75), Expect = 0.22
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +3

Query: 102 KQLMAS-RCVSK-AAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGT 275
           KQ  AS  C+S   A+A   G+ WA   G  +SK    +++  +E   + T+GGVT+ G 
Sbjct: 165 KQYSASWMCLSLLVALACSAGDTWASEVGPVLSKSS-PRLITTWEKVPVGTNGGVTVVGL 223

Query: 276 RYIYLSGT 299
               L GT
Sbjct: 224 VSSLLGGT 231


>BC005063-1|AAH05063.1|  261|Homo sapiens retbindin protein.
          Length = 261

 Score = 33.5 bits (73), Expect = 0.38
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 429 LTCRLRMRPAGLEWVLHKEKLRRLAVSSCNARRPCRA 319
           + CR+ MRP GL WVL +  L  + + +C   RP +A
Sbjct: 33  MDCRVHMRPIGLTWVL-QLTLAWILLEACGGSRPLQA 68


>AY028917-1|AAK26169.1|  229|Homo sapiens retbindin protein.
          Length = 229

 Score = 33.5 bits (73), Expect = 0.38
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 429 LTCRLRMRPAGLEWVLHKEKLRRLAVSSCNARRPCRA 319
           + CR+ MRP GL WVL +  L  + + +C   RP +A
Sbjct: 1   MDCRVHMRPIGLTWVL-QLTLAWILLEACGGSRPLQA 36


>AB097001-1|BAC77354.1|  910|Homo sapiens putative NFkB activating
           protein protein.
          Length = 910

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 177 EGFEISKDEVAKIVAGFENESLLTS-GGVTIAGTRYIYLSGTERIIRAKLGKVGVHC 344
           E  E S DEV K++  F +  L     G +  GTR + L G+ R+   K  K+ V+C
Sbjct: 455 EVVESSSDEVDKLLKEFLHLDLTAPIPGASPEGTRQLLLEGSLRMKEGKDSKMDVYC 511


>BC054003-1|AAH54003.1| 1192|Homo sapiens RNASEN protein protein.
          Length = 1192

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 22/64 (34%), Positives = 30/64 (46%)
 Frame = +2

Query: 242 SNKRRCYDSGHAVHLPQRYRTYHTRKARQGRRALHEDTASRRNFSL*RTHSSPAGRIRSR 421
           S  R  YD G     P R+R+Y   + R+  R  H D  +RR+ SL R++     R  SR
Sbjct: 263 SRYRSDYDRGRT---PSRHRSYERSRERERERHRHRD--NRRSPSLERSYKKEYKRSGSR 317

Query: 422 QVRR 433
              R
Sbjct: 318 SPSR 321


>AB012644-1|BAA32813.1|  227|Homo sapiens TAP1N protein.
          Length = 227

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -3

Query: 255 RRLLEVIHSQNRQLSSPLHLLIFRTLLTWPRHFRRDRQLLPLKHIWRPL 109
           RRLL  + S+ R+LS  L L++  +L  WP H  R   L     + +P+
Sbjct: 174 RRLLGCLGSETRRLSLFLVLVVLSSLGRWPFHSLRAASLTGFYKMAQPI 222


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,121,181
Number of Sequences: 237096
Number of extensions: 1435345
Number of successful extensions: 2833
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2833
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4156838854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)