Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_J13
         (527 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0212 - 1605544-1605647,1605799-1605842,1606189-1606230,160...    30   1.3  
11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230...    29   3.1  
02_04_0292 + 21642544-21642726                                         27   7.1  
01_06_1807 - 40021733-40021987                                         27   9.3  

>12_01_0212 -
           1605544-1605647,1605799-1605842,1606189-1606230,
           1606306-1606394,1606477-1606521,1606801-1606845,
           1606874-1606981,1607065-1607150,1607553-1607640,
           1608185-1608385,1608790-1608865,1608951-1609000,
           1609082-1609144,1609225-1609278,1609395-1609497,
           1610010-1610050,1610654-1610685,1612086-1612224
          Length = 469

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 74  QEIIQITSYSE*LHCC-ECPKWI*YNTLYLGNFVYWL 181
           Q +I++  Y    HC   C  W+ +NTL+  +F YW+
Sbjct: 53  QIVIKLYQYH---HCSPSCTSWVIFNTLFGLSFTYWM 86


>11_06_0495 -
           24319531-24320831,24320923-24321109,24322919-24323062,
           24324467-24324469
          Length = 544

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -2

Query: 373 LHPTHTIRRYMSSVMDLEIHYFEQISNL 290
           + PT T+RR M++V  L +H+F+Q S +
Sbjct: 331 VRPTPTVRRIMTNV--LSLHFFQQASGI 356


>02_04_0292 + 21642544-21642726
          Length = 60

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 367 PTHTIRRYMSSVMDLEIHYFEQ 302
           P  T+RRY S++ DL  H FE+
Sbjct: 18  PPDTVRRYESAISDLAGHGFEE 39


>01_06_1807 - 40021733-40021987
          Length = 84

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 358 TIRRYMSSVMDLEIHYFEQISNLCHGQQHSMQSTL 254
           T+RRY S++ DL  H FE+   L    +  +Q+ +
Sbjct: 45  TVRRYESAISDLAGHGFEEEGYLVINYKSDLQTVM 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,973,322
Number of Sequences: 37544
Number of extensions: 239426
Number of successful extensions: 386
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)