Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_J12
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    26   3.1  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    26   4.1  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   5.5  
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    25   7.2  
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    25   9.5  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   9.5  

>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 274 FEVGPEIINCENINDIKVQLDSELENAL 357
           F++ P++    NI DI+ Q+ S  E  L
Sbjct: 16  FQIAPDVKTISNIQDIRAQIQSFREKEL 43


>SPCC663.03 |pmd1||leptomycin efflux transporter
            Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 402  EASVYSTILNLPNSRTLLCRYRSQYKSGSQ 491
            +A+++  IL LPN    LC  +    SG Q
Sbjct: 1234 KANIHEFILGLPNGYNTLCGQKGSSLSGGQ 1263


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 19/51 (37%), Positives = 22/51 (43%)
 Frame = +1

Query: 256  STGVLHFEVGPEIINCENINDIKVQLDSELENALRRDPDAKANKPAFEAKQ 408
            S   L F  G  I    NI+D  VQL+S L    R      AN+ A   KQ
Sbjct: 2632 SNPTLDFMTGILISTLGNIHDAPVQLNSILLENARGTLSEMANRVASHYKQ 2682


>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +1

Query: 340 ELENALRRDPDAKANKPA-----FEAKQAFIRQYSICQIVELCY 456
           E +  +RR  + +A++ A     FEA+  F +Q+   + V+ CY
Sbjct: 45  ERQKLVRRIKNCRASEDADTLGRFEAEFEFAKQFDFTKFVDYCY 88


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 182 NFDFSPNSITMFPTIFRSAFVFNTTDLVFVSIRKSKIFWFFN 57
           NFD  P+++T        A +    D+V +  +  ++F FFN
Sbjct: 268 NFDGPPSAVTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFN 309


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = +1

Query: 304 ENINDIKVQLDSELENALRRD---PDAKA--NKPAFEAKQAFIRQYSICQIVEL 450
           + + D+  +L S  ++ + RD   P A++  N      K   IR Y++C IVEL
Sbjct: 25  KRLRDLLGELTSLSQDTIDRDSVLPVARSLVNNNLLHHKDKGIRSYTLCCIVEL 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,236,618
Number of Sequences: 5004
Number of extensions: 43891
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)