Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_J12
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0805 - 23329048-23329322,23330049-23330301,23330793-233310...    28   5.5  
09_04_0593 - 18825741-18826702,18826994-18827875,18828687-188287...    27   7.3  
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877...    27   9.7  
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420...    27   9.7  

>12_02_0805 -
           23329048-23329322,23330049-23330301,23330793-23331029,
           23332048-23332176,23334205-23334210
          Length = 299

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 133 LNIVGNIVIELGEKSKLFSGTYTAQATS 216
           L+ +GN  I LGE+ KLF+ T  A  T+
Sbjct: 42  LDFIGNGTISLGEQVKLFTKTKEAMITA 69


>09_04_0593 -
           18825741-18826702,18826994-18827875,18828687-18828775,
           18828942-18829080,18829405-18829531,18829629-18829838
          Length = 802

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 429 NLPNSRTLLCRYRSQYKSGSQSVTSFR 509
           +LP++R+L CR RS   S S +V S R
Sbjct: 48  DLPHTRSLPCRARSPSSSSSSNVNSGR 74


>08_01_0892 -
           8778097-8778236,8778390-8778486,8778568-8778747,
           8779138-8779247,8781153-8781294,8782298-8782686,
           8782752-8782834,8783524-8785244,8785894-8786040,
           8786121-8786264,8786669-8786741,8787413-8787633
          Length = 1148

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -3

Query: 170 SPNSITMFPTIFRSAF--VFNTTDLVFVSIRKSKIFW 66
           +P  + M  T+F +    VFNT DLV     K++ FW
Sbjct: 402 TPCKVVMSGTLFHNHVKEVFNTLDLVRPGFLKTETFW 438


>07_01_0566 +
           4207894-4207974,4208090-4208144,4208671-4208759,
           4209742-4209794,4209966-4210120,4210201-4210528,
           4210618-4210730,4211394-4211538,4211951-4212259,
           4212340-4212420,4212989-4213349
          Length = 589

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 289 EIINCENINDIKVQLDSELENALRRDPDAKA 381
           +I++C  ++D + QL  E E  LRR  D  A
Sbjct: 126 KIVDCGEVSDSQNQLKGEKEKKLRRTEDNSA 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,810,380
Number of Sequences: 37544
Number of extensions: 251251
Number of successful extensions: 579
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)