Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_J11
         (156 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ...    24   2.4  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    23   4.1  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    23   5.4  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    23   5.4  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    23   5.4  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    23   7.2  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    23   7.2  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    22   9.5  

>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 93  WAGPRLAPPPRTHYATITSHITHYTRT 13
           W    LA PP    +T+ SHI  Y  T
Sbjct: 172 WLPVSLATPPFGLLSTLASHIVKYVLT 198


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 151 LYIYSLSYRKAIFAVEYPPVGGATVGSAPADALRHYNV 38
           L++Y   +  A+ +V++ P G   V  +    +R YNV
Sbjct: 266 LHVYK-DHVSAVMSVDFSPTGQEFVSGSYDKTIRIYNV 302


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 51  RSASAGAEPTVAPPTGGYST 110
           RSAS  A+  V P T  YST
Sbjct: 76  RSASTSAKKNVIPITRSYST 95


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 63  AGAEPTVAPPTGGYSTAKIAFLY 131
           AGA+  +APP   ++ A   ++Y
Sbjct: 181 AGAQHNLAPPQSSHTEASQGYMY 203


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1316

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 32   MCDVIVA*CVRGGGANRGPAHRGILYS 112
            +C   +A  V GGG  RG +  GILY+
Sbjct: 1004 ICGKAIA-LVLGGGGARGISQIGILYA 1029


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 99  PRWAGPRLAPPP 64
           P W+GP+ AP P
Sbjct: 700 PFWSGPKRAPTP 711


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 3/20 (15%)
 Frame = -1

Query: 57  HYATITSHITHYT---RTYP 7
           HYA   +H TH+T   R YP
Sbjct: 754 HYALSFNHYTHFTSPIRRYP 773


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 48  WRSASAGAEPTVAPPTGGYSTAK 116
           W+  +A       PP+  Y+TAK
Sbjct: 85  WQPGNASTMYASPPPSSNYNTAK 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 657,576
Number of Sequences: 5004
Number of extensions: 9043
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 32
effective length of database: 2,202,350
effective search space used: 41844650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)