Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_J11
         (156 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0998 + 25126114-25126596,25129213-25129339,25129349-251294...    27   2.7  
12_01_0017 - 127617-127775,127920-128000,128284-128395,128486-12...    27   2.7  
09_01_0005 - 193214-193228,193659-193776,193876-194072,194534-19...    26   4.8  
06_01_0807 - 6069998-6071326                                           25   6.3  
01_05_0527 - 22951520-22951615,22951723-22951866,22952618-229526...    25   6.3  
08_01_0340 - 3008124-3009176                                           25   8.3  
07_03_0910 - 22519006-22519159,22519300-22519355,22519433-225197...    25   8.3  

>12_02_0998 +
           25126114-25126596,25129213-25129339,25129349-25129459,
           25130122-25130270,25130356-25130643,25130753-25130941,
           25131445-25131619,25132219-25132316
          Length = 539

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 103 YPPVGGATVGSAPADALRHYNVTHNAL 23
           YPP GG + GS P  A  H   ++ A+
Sbjct: 483 YPPYGGTSYGSPPGGAGPHNGGSYGAV 509


>12_01_0017 -
           127617-127775,127920-128000,128284-128395,128486-129538,
           129617-129705,130136-130309,130566-130687,130790-130924,
           131132-131494,131561-131728,131850-131889
          Length = 831

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = -1

Query: 141 TPYRIGRQSSL*SIPRWAGPRLAPPPRTHYATITSHITHYTRTYP 7
           +P  + R  S  S+     P   P    HY ++TS  TH     P
Sbjct: 210 SPSVVSRSRSTSSVTNVPKPTTRPATARHYFSVTSECTHKVEGLP 254


>09_01_0005 -
           193214-193228,193659-193776,193876-194072,194534-195493
          Length = 429

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 135 YRIGRQSSL*SIPRWAGPRLAPPPRTHYATITSHI-THYT 19
           Y+  RQ     +PR     + PPPR H ++ +S + T++T
Sbjct: 186 YKPTRQDRTPPLPRTPDLLVRPPPRDHLSSASSQLMTNHT 225


>06_01_0807 - 6069998-6071326
          Length = 442

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 56  CVRGGGANRGPAHRGILYSED 118
           C+ GGG   GP++R + ++ D
Sbjct: 408 CLGGGGGGGGPSNRVVAFAND 428


>01_05_0527 -
           22951520-22951615,22951723-22951866,22952618-22952688,
           22952790-22952889,22953684-22953714,22954344-22954441,
           22954949-22955137
          Length = 242

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 51  RSASAGAEPTVAPPTGG 101
           RSA AGA  T AP +GG
Sbjct: 9   RSAGAGAAATAAPESGG 25


>08_01_0340 - 3008124-3009176
          Length = 350

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 82  WPRPPGDTLQRRLPSY 129
           W  PPGDT   R P Y
Sbjct: 22  WATPPGDTFMVRGPDY 37


>07_03_0910 -
           22519006-22519159,22519300-22519355,22519433-22519702,
           22519808-22519986,22520146-22520374,22520985-22521180,
           22521728-22521818,22521921-22521975,22522812-22522902,
           22523366-22523424,22524000-22524050
          Length = 476

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 99  PRWAGPRLAPPPRTHYAT 46
           P+   P +APPP+  YAT
Sbjct: 210 PKVERPSVAPPPKVDYAT 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,108,902
Number of Sequences: 37544
Number of extensions: 77519
Number of successful extensions: 343
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 14,793,348
effective HSP length: 32
effective length of database: 13,591,940
effective search space used: 258246860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)