Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_J09
(379 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 181 3e-47
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 91 5e-20
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 91 5e-20
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 66 2e-12
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 26 1.7
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 26 2.3
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 25 5.2
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 25 5.2
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 6.9
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 24 9.1
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi... 24 9.1
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 181 bits (441), Expect = 3e-47
Identities = 82/117 (70%), Positives = 99/117 (84%)
Frame = +3
Query: 27 DLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFISGFAPLTSRGSQQYRA 206
DLNHLVS M+GVTT RFPG+LN+DLRKLAVNMVPFPRLHFF+ GFAPL + GS ++A
Sbjct: 224 DLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQA 283
Query: 207 LTVPELTQQMFDAKNLMAACDPRHGR*LTVATIFRGRMSLHEVDEQIMNIPNKNSSY 377
++VPELTQQMFDA N+M A DPRHGR LTVA +FRG++S+ EVDEQI ++ KNS+Y
Sbjct: 284 VSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAY 340
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 91.1 bits (216), Expect = 5e-20
Identities = 40/118 (33%), Positives = 68/118 (57%)
Frame = +3
Query: 18 TRGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFISGFAPLTSRGSQQ 197
T +LN L++ +S +T LRF G LN DL + N+VP+PR+HF + ++P+ S
Sbjct: 227 TYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAF 286
Query: 198 YRALTVPELTQQMFDAKNLMAACDPRHGR*LTVATIFRGRMSLHEVDEQIMNIPNKNS 371
+ + +V E+T Q F+ N M CDPR GR + ++RG + +V + +I ++ +
Sbjct: 287 HESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRT 344
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 91.1 bits (216), Expect = 5e-20
Identities = 41/115 (35%), Positives = 65/115 (56%)
Frame = +3
Query: 27 DLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFISGFAPLTSRGSQQYRA 206
+LN L++ +S +T LRF G LN DL + N+VP+PR+HF + +AP+ S + +
Sbjct: 226 NLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHES 285
Query: 207 LTVPELTQQMFDAKNLMAACDPRHGR*LTVATIFRGRMSLHEVDEQIMNIPNKNS 371
+V E+T Q F+ N M CDPR GR + ++RG + +V + I K +
Sbjct: 286 NSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRT 340
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 65.7 bits (153), Expect = 2e-12
Identities = 33/112 (29%), Positives = 64/112 (57%), Gaps = 4/112 (3%)
Frame = +3
Query: 33 NHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFISGFAPLTSRGSQQYRAL- 209
N LVS MS TT LR+PG +N DL + +++P PR HF ++ + P T++ ++ +A+
Sbjct: 229 NQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIR 288
Query: 210 --TVPELTQQMFDAKNLMAACDP-RHGR*LTVATIFRGRMSLHEVDEQIMNI 356
TV ++ +++ KN M + +P + +++ I +G +V + ++ I
Sbjct: 289 KTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRI 340
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 26.2 bits (55), Expect = 1.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 170 SETRNKKVQTWEWHHVHSQLAEI 102
++ NK VQT EWH S++A+I
Sbjct: 1186 AKAANKIVQTHEWHPEGSRVAQI 1208
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 25.8 bits (54), Expect = 2.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 152 KVQTWEWHHVHSQLAEIRIQLT 87
K+Q E HH +S+ A +R+QL+
Sbjct: 94 KLQDSEIHHRYSEFASLRVQLS 115
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 24.6 bits (51), Expect = 5.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 27 DLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMV 131
DLN SL + GV +F G + + R +A+NM+
Sbjct: 326 DLNSDSSLRVLGVNILAKFLGNRDNNTRYVALNML 360
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 24.6 bits (51), Expect = 5.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 30 LNHLVSLTMSGVTTCLRFPGQLN 98
L HLV + G++ C +PG+ N
Sbjct: 331 LTHLVDAPLLGMSVCPLYPGEEN 353
>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 24.2 bits (50), Expect = 6.9
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -3
Query: 137 EWHHVHSQLAEIRI---QLTGEPEAGGNTRHG 51
E+HH+HS L ++ + Q++ P A N R G
Sbjct: 230 EYHHLHSLLLDVTLRNPQISRPPFAPLNPRKG 261
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 23.8 bits (49), Expect = 9.1
Identities = 7/13 (53%), Positives = 12/13 (92%)
Frame = +3
Query: 330 EVDEQIMNIPNKN 368
EVDE+++N+P+ N
Sbjct: 564 EVDEELLNVPSNN 576
>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 308
Score = 23.8 bits (49), Expect = 9.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 63 HQTWSATPGGSSRPSCRIPAA 1
H T +TPG +S P C + A
Sbjct: 74 HHTSQSTPGETSSPVCPVSGA 94
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,507,654
Number of Sequences: 5004
Number of extensions: 26306
Number of successful extensions: 83
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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