Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_J09
         (379 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   4.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   4.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   6.4  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 288 LTVATIFRGRMSLHEVDEQIMNIPNKNSSY 377
           +T   I    ++  +VD  +   P KNS Y
Sbjct: 7   ITTEDILLLNLTTQDVDGFLQGFPGKNSPY 36


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -3

Query: 206  RAVLLTAAGCEGSETRNKKVQTWEWHHVHSQLAEIRIQLTGEPEAGGNTRHGQR 45
            R V+  A+GC   ET++K    +++H +     E  ++L    E G N    Q+
Sbjct: 1706 RPVVSCASGCTAVETKSK---PYKFHCMEKN--EAAMKLKKRIEKGANPDLSQK 1754


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 140 WEWHHVHSQLAEIRI 96
           W WH V+    +IRI
Sbjct: 210 WHWHLVYPFEGDIRI 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,287
Number of Sequences: 438
Number of extensions: 1830
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)