Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_J07
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...   109   2e-25
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    35   0.004
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...    34   0.007
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    32   0.038
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    31   0.067
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    31   0.088
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    29   0.36 
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    27   1.1  
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    27   1.4  
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    25   4.4  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    25   4.4  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    24   7.7  

>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score =  109 bits (261), Expect = 2e-25
 Identities = 49/73 (67%), Positives = 61/73 (83%)
 Frame = +3

Query: 183 RFYANDVRFGADVRALMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVANG 362
           R YA D++FG D RA +L GVD LA AV+VT+GPKGRNV+++Q +GSPKITKDGVTVA  
Sbjct: 31  RTYAKDLKFGVDARASLLTGVDTLARAVSVTLGPKGRNVLIDQPFGSPKITKDGVTVARS 90

Query: 363 VELKDKFQNIGAK 401
           V LKDKF+N+GA+
Sbjct: 91  VSLKDKFENLGAR 103


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 35.1 bits (77), Expect = 0.004
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 210 GADVRALMLQGVDILADAVAVTMGPKGRNVILE-QSWGSPKITKDGVTVANGVEL 371
           G + R     G   + D V  T+GPKG + IL+  S G   +T DG T+   + L
Sbjct: 18  GENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIAL 72


>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score = 34.3 bits (75), Expect = 0.007
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +3

Query: 216 DVRALMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTV 353
           +VR   +     +ADA+  ++GPKG + +++   G   +T DG T+
Sbjct: 19  EVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATI 64


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 31.9 bits (69), Expect = 0.038
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = +3

Query: 186 FYANDVRFGADVRALMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVANGV 365
           F + +   G DVR   +     +A+ V  ++GP G + +L    G   +T DG T+ + +
Sbjct: 11  FLSGEKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLL 70

Query: 366 ELK 374
           +++
Sbjct: 71  DVE 73


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 31.1 bits (67), Expect = 0.067
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +3

Query: 210 GADVRALMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVANGVELKDKFQN 389
           G D     +     +A+ V  ++GP+G + IL    G   +T DG T+ + +E++ +   
Sbjct: 32  GIDAVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQIAK 91

Query: 390 I 392
           +
Sbjct: 92  L 92


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 30.7 bits (66), Expect = 0.088
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 291 RNVILEQSWGSPKITKDGVTVAN-GVELKDKFQNIGAK 401
           R VI ++   S  +T  G T  N G+ELKD+F+ +G K
Sbjct: 542 RKVIKQERPDSIYVTFGGQTALNVGIELKDEFEQLGVK 579


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 28.7 bits (61), Expect = 0.36
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 252 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVANGVELKDKFQNIGAK 401
           L D +   +GP G   +L    G+ K+TKDG  +   +++++   +  AK
Sbjct: 28  LQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLTEMQIQNPTASCIAK 77


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 234 LQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVANGVEL 371
           +Q    +AD +   +GP+    +L    GS  +T DG  +   +E+
Sbjct: 25  IQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEV 70


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 258 DAVAVTMGPKGRNVILEQSWGSPKITKDGVTV 353
           D +  T+GP G + ++    G   I+ DG T+
Sbjct: 38  DTIRTTLGPLGADKLMVDDRGEVVISNDGATI 69


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +3

Query: 252 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVANGVEL 371
           L++    ++GP G+N I+        +T D  T+   +E+
Sbjct: 38  LSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATIIRELEV 77


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 138 VVRQSVTLHKTHQLARFYANDVRF 209
           V+ QS  LHK HQ+     ND++F
Sbjct: 294 VLEQSDLLHKKHQMLIQLENDLQF 317


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -2

Query: 355 ATVTPSFVILGEPQDCSRITFLPFGPIVTATASARMSTPCSIRALTSAPNL 203
           A+V P    +  P    ++  L   P+  A  SAR S+  S  ++ + P+L
Sbjct: 539 ASVRPITAAVFAPTKTKQLLTLSGDPVYLAAISARRSSVISNASIETGPSL 589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,715,896
Number of Sequences: 5004
Number of extensions: 33509
Number of successful extensions: 75
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)