Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_J07
         (401 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    25   0.32 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.32 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   1.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   6.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   6.9  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          20   9.2  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 25.0 bits (52), Expect = 0.32
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +2

Query: 218 CKSPNAAGR*HSSGRGCRHNGSKRQKRDSGAVLGFP 325
           C  P+      SS RG  HN     +  SG V GFP
Sbjct: 16  CTRPSRGNAVPSSQRGNVHNDPLVVETTSGLVRGFP 51


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.0 bits (52), Expect = 0.32
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +2

Query: 218 CKSPNAAGR*HSSGRGCRHNGSKRQKRDSGAVLGFP 325
           C  P+      SS RG  HN     +  SG V GFP
Sbjct: 16  CTRPSRGNAVPSSQRGNVHNDPLVVETTSGLVRGFP 51


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -1

Query: 392 DVLEFVFQFDPVSDCHSIFCDLR---GTPGLLQNHVSAFWTHCDGNRVR 255
           D+   V Q  PV+    +  D++   G+P + Q+  S+  T C G+ VR
Sbjct: 250 DIEPTVQQHQPVTVNRQLNSDVQPGHGSPPVKQHRSSSASTTCSGHTVR 298


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +2

Query: 323 P*DHKRWSDSR*RGRTERQIPEHR 394
           P D   W+D        R IP+H+
Sbjct: 628 PSDESHWNDLAMEFYYNRSIPDHK 651


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +2

Query: 323 P*DHKRWSDSR*RGRTERQIPEHR 394
           P D   W+D        R IP+H+
Sbjct: 666 PSDESHWNDLAMEFYYNRSIPDHK 689


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 368 FDPVSDCHSIFCDLR 324
           F   S CHS + DLR
Sbjct: 224 FQRTSSCHSRYEDLR 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,487
Number of Sequences: 438
Number of extensions: 2263
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)