Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_J06
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    31   0.099
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    27   1.6  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    27   2.1  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    26   3.7  
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    25   4.9  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    25   6.5  

>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 31.1 bits (67), Expect = 0.099
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +2

Query: 296 LPGVYASFPLFSYCLSIV*FLWVLDTLINEINYDINSILKVAILSK 433
           LP  Y  FP FSYCL +  FL V +     + YDI  ++   I+ K
Sbjct: 390 LPLTY--FPSFSYCLELQNFLPVFNAQDPNLRYDIARMIVQKIIEK 433


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = +3

Query: 174 PSTIELEEWEAF--LNSNISEVMDGDVESLTQLNMVSVNHLSTFPAFTLAFHCFPIVFLL 347
           P+++ELE+ +    L+  + ++  GDV S+  L+ +S   +  F +  ++    PI++L 
Sbjct: 144 PTSLELEQVKEINRLDGLLLKLQLGDVPSVNWLDDISFGKIKDFRSKHMSLVTIPILYLD 203

Query: 348 F 350
           F
Sbjct: 204 F 204


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 165 GKEPSTIELEEWEAFLNSNISEVMDGDVESLTQLNMV-SVNHLST 296
           G  PS + LEEW+ +L  N SE    D  S TQL  V  ++H  T
Sbjct: 225 GTYPSLL-LEEWDRYLMQNGSENDRPDSYSSTQLYCVLCLDHSGT 268


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 325 QWKASVNAGKVLKWLTLTIF 266
           +WK S  AGK+L+W+  TIF
Sbjct: 472 RWKLS--AGKILQWIFQTIF 489


>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 288 LSTFPAFTLAFHCFPIVFLL 347
           +S F  F++  +CFPI++L+
Sbjct: 146 ISFFNLFSIPAYCFPIIYLI 165


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 232 TSLILELRNASHSSSSIVEGSLPVN 158
           T  I EL+N SH SSS VE S  V+
Sbjct: 71  TLSIYELKNRSHFSSSPVEESSTVS 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,967,044
Number of Sequences: 5004
Number of extensions: 36508
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)