Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_J06
         (507 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y08387-1|CAA69667.1|  453|Homo sapiens mu-adaptin-related protei...    30   5.3  
BX640759-1|CAE45865.1|  192|Homo sapiens hypothetical protein pr...    30   5.3  
BC018705-1|AAH18705.1|  453|Homo sapiens AP4M1 protein protein.        30   5.3  
AF155158-1|AAD43328.1|  453|Homo sapiens adaptor-related protein...    30   5.3  
AF020796-1|AAD25869.1|  453|Homo sapiens mu-adaptin-related prot...    30   5.3  

>Y08387-1|CAA69667.1|  453|Homo sapiens mu-adaptin-related protein 2
           protein.
          Length = 453

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 156 YNYTSSLPSAAAPLVIIYSSLHFYFIRNPYICLVIRYSKNIT 31
           Y   + LP   +P+V+ +   HF  IR+  + LV+  S+N++
Sbjct: 34  YRKLTGLPGDESPVVMHHHGRHFIHIRHSGLYLVVTTSENVS 75


>BX640759-1|CAE45865.1|  192|Homo sapiens hypothetical protein
           protein.
          Length = 192

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 156 YNYTSSLPSAAAPLVIIYSSLHFYFIRNPYICLVIRYSKNIT 31
           Y   + LP   +P+V+ +   HF  IR+  + LV+  S+N++
Sbjct: 19  YRKLTGLPGDESPVVMHHHGRHFIHIRHSGLYLVVTTSENVS 60


>BC018705-1|AAH18705.1|  453|Homo sapiens AP4M1 protein protein.
          Length = 453

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 156 YNYTSSLPSAAAPLVIIYSSLHFYFIRNPYICLVIRYSKNIT 31
           Y   + LP   +P+V+ +   HF  IR+  + LV+  S+N++
Sbjct: 34  YRKLTGLPGDESPVVMHHHGRHFIHIRHSGLYLVVTTSENVS 75


>AF155158-1|AAD43328.1|  453|Homo sapiens adaptor-related protein
           complex AP-4 mu4 subunit protein.
          Length = 453

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 156 YNYTSSLPSAAAPLVIIYSSLHFYFIRNPYICLVIRYSKNIT 31
           Y   + LP   +P+V+ +   HF  IR+  + LV+  S+N++
Sbjct: 34  YRKLTGLPGDESPVVMHHHGRHFIHIRHSGLYLVVTTSENVS 75


>AF020796-1|AAD25869.1|  453|Homo sapiens mu-adaptin-related protein
           2 protein.
          Length = 453

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 156 YNYTSSLPSAAAPLVIIYSSLHFYFIRNPYICLVIRYSKNIT 31
           Y   + LP   +P+V+ +   HF  IR+  + LV+  S+N++
Sbjct: 34  YRKLTGLPGDESPVVMHHHGRHFIHIRHSGLYLVVTTSENVS 75


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,007,138
Number of Sequences: 237096
Number of extensions: 1230522
Number of successful extensions: 2147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2147
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4706589866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)