Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_J06
         (507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92782-3|CAB07189.2|  326|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z72502-8|CAD44097.1|  374|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical pr...    27   5.9  
AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical ...    27   5.9  
AF026202-2|AAB71242.2|  501|Caenorhabditis elegans Hypothetical ...    27   5.9  
Z81477-4|CAB03925.2|  279|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z78545-3|CAB01767.1|  306|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>Z92782-3|CAB07189.2|  326|Caenorhabditis elegans Hypothetical
           protein F14F8.4 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 313 SVNAGKVLKWLTLTIFNCVRDSTSPSITSL 224
           S N GK LK L   + NCVR +T+P   S+
Sbjct: 296 SFNLGKFLKILFGGVDNCVRSTTAPVAFSI 325


>Z72502-8|CAD44097.1|  374|Caenorhabditis elegans Hypothetical
           protein C08B6.11 protein.
          Length = 374

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 126 AAPLVIIYSSLHFYFIRNPYICL 58
           A PL+ I+ +L+FYF   PYI L
Sbjct: 349 AFPLICIFITLYFYFYVMPYIGL 371


>Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical protein
            F29C12.3 protein.
          Length = 1631

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 202  SHSSSSIVEGSLPVNV*LH*LSALGCRSPRHHIFV 98
            S SSS I + SL V   LH  +ALG      HI +
Sbjct: 1054 SRSSSDIPDTSLGVQAPLHLFAALGSHETGRHILI 1088


>AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical
            protein F29C12.3 protein.
          Length = 1631

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 202  SHSSSSIVEGSLPVNV*LH*LSALGCRSPRHHIFV 98
            S SSS I + SL V   LH  +ALG      HI +
Sbjct: 1054 SRSSSDIPDTSLGVQAPLHLFAALGSHETGRHILI 1088


>AF026202-2|AAB71242.2|  501|Caenorhabditis elegans Hypothetical
           protein C10E2.2 protein.
          Length = 501

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = -2

Query: 335 NRKTMES*RKRREGAQVVNTHHIQLCQRFNITIHNLTYIRVKKCXXXXXXXXXXXFTCKC 156
           N   +E  +KRR   QVV+  H +L  + N+ + N++   +K             +T KC
Sbjct: 214 NGVDIEKMKKRRMTPQVVDKFHEKLGLKVNVDVLNVSESSLKSENIREIQKGGTLYTLKC 273

Query: 155 IITL 144
           + T+
Sbjct: 274 LKTV 277


>Z81477-4|CAB03925.2|  279|Caenorhabditis elegans Hypothetical
           protein C27C7.5 protein.
          Length = 279

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 135 AES*CNYTFTGKEPSTIELEEWEAFLNSNISEVMDGDV 248
           A++ C  + +G  PS +    WE F NSN +    GD+
Sbjct: 94  ADTTCPTSISGSFPSKMR-SMWETFTNSNYNITFTGDL 130


>Z78545-3|CAB01767.1|  306|Caenorhabditis elegans Hypothetical
           protein M03B6.4 protein.
          Length = 306

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = -3

Query: 268 FNCVRDSTSPSITSLILE--LRNASHSSSSIVEGSLPVNV*LH*LSALGCRSPRHHIFVT 95
           F+ + D   P   S + E  +  +S+ +S++   S P ++  +    L C +P+ H+ + 
Sbjct: 56  FDSINDENDPFDKSSMNEESILASSNQNSALSLLSAPSSIARN--KVLACSTPKDHLEID 113

Query: 94  AFLFYTEPLYLFSN 53
             LF T P+ +  N
Sbjct: 114 RDLFKTSPIEVHGN 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,780,079
Number of Sequences: 27780
Number of extensions: 199139
Number of successful extensions: 480
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)