Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_J03
(601 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 206 2e-54
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 206 2e-54
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 26 4.8
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 25 6.4
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 25 8.5
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 8.5
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 25 8.5
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 25 8.5
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 206 bits (503), Expect = 2e-54
Identities = 95/165 (57%), Positives = 116/165 (70%)
Frame = +1
Query: 106 YQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIV 285
YQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTCQ+ SR+ GD+++
Sbjct: 16 YQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVL 75
Query: 286 CAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTGATEVTGDEYNVEPV 465
A+S ELPRYGIK GL N+ AAY TG Y G TE G+ E +
Sbjct: 76 AHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAI 135
Query: 466 DNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRF 600
++GP F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS RF
Sbjct: 136 EDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRF 180
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 206 bits (503), Expect = 2e-54
Identities = 95/165 (57%), Positives = 116/165 (70%)
Frame = +1
Query: 106 YQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIV 285
YQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTCQ+ SR+ GD+++
Sbjct: 16 YQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVL 75
Query: 286 CAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTGATEVTGDEYNVEPV 465
A+S ELPRYGIK GL N+ AAY TG Y G TE G+ E +
Sbjct: 76 AHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAI 135
Query: 466 DNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRF 600
++GP F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS RF
Sbjct: 136 EDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRF 180
>SPAC1687.20c |mis6||inner centromere protein
Mis6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -3
Query: 242 VTSLLD-NRTISRYFGVLYLFLSWTTRR 162
V LD N + RY+GVL+ FL + T R
Sbjct: 120 VYEFLDGNNLLCRYYGVLFHFLDFLTLR 147
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 25.4 bits (53), Expect = 6.4
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = -3
Query: 554 PFMAPNTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYSSPVTSVAPV*RLSKPSL 393
PF +T P++ + +S HL S+ S LY S P S P L
Sbjct: 217 PFPRESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPLL 270
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 109 GNRLKYCLFLYYFXRIPFSKIFLK*KYPHSAHRS 8
G R C F +F PFS++++ + S+ RS
Sbjct: 336 GVRANICSFKQHFFLSPFSRLYVPRSHRRSSDRS 369
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 8.5
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = -3
Query: 575 FKPPSTA-PFMAPNTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYSSPVTSVA----PV*R 411
F ST+ P AP + +P+ KP++ N S+ + SSP+ S A PV +
Sbjct: 387 FPNSSTSNPSTAPASASPLASTLKPSTANDTNGSSSSSSSNPRTSSPLASNAENKPPVAQ 446
Query: 410 LSKPSLCNNL 381
S P L L
Sbjct: 447 QSPPVLLPTL 456
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 109 GNRLKYCLFLYYFXRIPFSKIFLK*KYPHSAHRS 8
G R C F +F PFS++++ + S+ RS
Sbjct: 336 GVRANICSFKQHFFLSPFSRLYVPRSHRRSSDRS 369
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 175 GQRGVCEHSSQFFPHDAS*I*PGNRLKYCLFLYYFXRI 62
G +G+C++ S P+D S N++K+ F Y +I
Sbjct: 145 GPKGMCDYCSPLEPYDES-YRQENKIKHLSFHAYLRKI 181
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,744
Number of Sequences: 5004
Number of extensions: 52065
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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