Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_J03
         (601 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   234   4e-62
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr...    28   4.4  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    27   7.7  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  234 bits (572), Expect = 4e-62
 Identities = 108/165 (65%), Positives = 126/165 (76%)
 Frame = +1

Query: 106 YQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIV 285
           YQVK +RRREGKTDYYARKRL VQDKNKYNTPKYRLIVR++NKDV  Q+AYS+IEGD +V
Sbjct: 16  YQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDVVAQLAYSKIEGDVVV 75

Query: 286 CAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTGATEVTGDEYNVEPV 465
            +AYSHELPRYG+KVGLTNYAAAY TG             DS Y G  E+TG++YNVE  
Sbjct: 76  ASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVEE- 134

Query: 466 DNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRF 600
           +     F+  LD+GLARTTTG+++F  MKG  DGG+NVPHS  RF
Sbjct: 135 EGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRF 179


>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical
           protein F25C8.3b protein.
          Length = 3175

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +2

Query: 269 RVITLSVL----PTLMNSHAMVSRWV*LTMLLPTALVCC 373
           RV+  ++L    P+L N+ A VSRW  +   LP  + CC
Sbjct: 77  RVVVQNILHGLSPSLSNALASVSRWKLVRAALPHVIQCC 115


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical
           protein F25C8.3a protein.
          Length = 3184

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +2

Query: 269 RVITLSVL----PTLMNSHAMVSRWV*LTMLLPTALVCC 373
           RV+  ++L    P+L N+ A VSRW  +   LP  + CC
Sbjct: 77  RVVVQNILHGLSPSLSNALASVSRWKLVRAALPHVIQCC 115


>Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical
           protein K10G4.5 protein.
          Length = 1251

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +1

Query: 190 YNTPKYRLIVRLSNKDVTCQVAYSRIEGDHI---VCAAYSHEL 309
           YN P+YR +++L  K   C+     + GD++   +CA +  EL
Sbjct: 548 YNDPEYRNVMKLKIKSPICE--QCEVTGDNLPFGICAEHETEL 588


>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical protein
            W05B2.2 protein.
          Length = 1278

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -1

Query: 307  VHESRQHRQCDHPQCVSMQLDR*HLYWITVQSVGTLECCICFYPGQRGV-CEHSSQF 140
            VH S +H QC HP      LD   +   +++S    E C+    G   V C+H   F
Sbjct: 1084 VHSSIEHLQCPHPYL--NPLDHPQMCITSLKSCSDSETCLKTTSGGNFVCCQHPPSF 1138


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -3

Query: 566 PSTAPFMAPNTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYSSP--VTSVAPV*RLSKPS 396
           PST       +  P    + PT+        P +TG+T  +SP  +TS AP  +   PS
Sbjct: 485 PSTQGVPTSTSNQPTPSTSNPTTPKSTVTASPSTTGATSTASPSTITSSAPTSQSHSPS 543


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,281,599
Number of Sequences: 27780
Number of extensions: 304789
Number of successful extensions: 775
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)