Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_J02
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   172   2e-44
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   171   3e-44
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    26   2.3  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    25   7.1  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    24   9.4  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  172 bits (418), Expect = 2e-44
 Identities = 83/131 (63%), Positives = 98/131 (74%)
 Frame = +2

Query: 59  PGNGMSEVI*SGG*AKHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQ 238
           P NG  ++I        +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQGFPM Q
Sbjct: 8   PANGTQKLIEIDD--DRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQ 65

Query: 239 GVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT 418
           GVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+IPGLT
Sbjct: 66  GVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLT 125

Query: 419 DGEVPRRLGPK 451
           D  VP+RLGPK
Sbjct: 126 DVTVPKRLGPK 136



 Score = 35.1 bits (77), Expect = 0.005
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +3

Query: 39  MKLNVSYPATGCQKLFEVVDE 101
           MKLN+SYPA G QKL E+ D+
Sbjct: 1   MKLNISYPANGTQKLIEIDDD 21


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  171 bits (417), Expect = 3e-44
 Identities = 82/131 (62%), Positives = 98/131 (74%)
 Frame = +2

Query: 59  PGNGMSEVI*SGG*AKHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQ 238
           P NG  ++I        +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQGFPM Q
Sbjct: 8   PANGTQKLIEIDD--DRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQ 65

Query: 239 GVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT 418
           GVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+IPGLT
Sbjct: 66  GVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLT 125

Query: 419 DGEVPRRLGPK 451
           D  VP+RLGPK
Sbjct: 126 DVTVPKRLGPK 136



 Score = 35.1 bits (77), Expect = 0.005
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +3

Query: 39  MKLNVSYPATGCQKLFEVVDE 101
           MKLN+SYPA G QKL E+ D+
Sbjct: 1   MKLNISYPANGTQKLIEIDDD 21


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 288 EWPFDIKRRTRLLVRTPCFIGKPCLSLP 205
           EWP  +K   +LLVRT  +   PC + P
Sbjct: 26  EWPLLLKNFDKLLVRTGHYTPIPCGNNP 53


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 266 LLMSKGHSCYRPRRDGERKRKSVRGCIVD 352
           ++ SK +S  +P+  G  KRK+ R  +VD
Sbjct: 97  VVTSKKNSRSKPKNGGASKRKASRRTVVD 125


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 20/86 (23%), Positives = 37/86 (43%)
 Frame = +2

Query: 170  DEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIV 349
            DEW        GG DK G   ++ +L   R+  ++ +     R ++D E++       ++
Sbjct: 1055 DEWFNTPFANTGGQDKIGLNEEEALLIIKRLHKVL-RPFLFRRLKKDVEKELPDKVEKVI 1113

Query: 350  DANLSVLALVIVRKGAQEIPGLTDGE 427
               LS L L + ++  +      DGE
Sbjct: 1114 KCPLSGLQLKLYQQMKKHGMLFVDGE 1139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,825,315
Number of Sequences: 5004
Number of extensions: 35018
Number of successful extensions: 65
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)