Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_J02
(451 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 158 2e-39
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 156 9e-39
11_04_0329 - 16442298-16443734 29 2.3
09_06_0032 + 20353789-20353963,20354240-20354340,20354426-203545... 29 2.3
03_01_0099 + 778521-778736,779521-779775,779831-779924,780064-78... 29 2.3
11_04_0101 - 13469731-13469898,13470163-13470279,13470528-134707... 28 4.0
10_01_0171 + 1917520-1918056,1919201-1919336,1921873-1922060,192... 27 9.2
08_02_1482 - 27428208-27428514,27428605-27428906,27431176-274322... 27 9.2
01_07_0038 - 40661252-40661460,40661743-40661824,40661882-406619... 27 9.2
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 158 bits (384), Expect = 2e-39
Identities = 75/116 (64%), Positives = 91/116 (78%), Gaps = 2/116 (1%)
Frame = +2
Query: 110 KLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHS 289
KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQGFPMKQGVLT+ RVRLL+ +G
Sbjct: 23 KLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTSGRVRLLLHRGTP 82
Query: 290 CYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPK 451
C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG ++PGLTD E PR GPK
Sbjct: 83 CFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGLTDTEKPRMRGPK 138
Score = 30.7 bits (66), Expect = 0.57
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 39 MKLNVSYPATGCQKLFEVVDE 101
MK N++ P TGCQK E+ D+
Sbjct: 1 MKFNIANPTTGCQKKLEIDDD 21
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 156 bits (378), Expect = 9e-39
Identities = 74/116 (63%), Positives = 90/116 (77%), Gaps = 2/116 (1%)
Frame = +2
Query: 110 KLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHS 289
KLR F++KR+ EV D LG+E+KGYV ++ GG DKQGFPMKQGVLT RVRLL+ +G
Sbjct: 23 KLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTAGRVRLLLHRGTP 82
Query: 290 CYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPK 451
C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG ++PGLTD E PR GPK
Sbjct: 83 CFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGENDLPGLTDTEKPRMRGPK 138
Score = 30.7 bits (66), Expect = 0.57
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 39 MKLNVSYPATGCQKLFEVVDE 101
MK N++ P TGCQK E+ D+
Sbjct: 1 MKFNIANPTTGCQKKLEIDDD 21
>11_04_0329 - 16442298-16443734
Length = 478
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 405 ISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRG 298
+ CAP M LAS+ P + LRF S RRG
Sbjct: 77 LPCAPNSFMLNITLRALASSPDPASALRFFSLLRRG 112
>09_06_0032 +
20353789-20353963,20354240-20354340,20354426-20354560,
20354633-20354714,20354829-20354896,20354984-20355073,
20355133-20355257,20355384-20355717,20355841-20355957,
20356058-20356485,20356564-20356813,20356944-20357194,
20357278-20357587
Length = 821
Score = 28.7 bits (61), Expect = 2.3
Identities = 25/102 (24%), Positives = 44/102 (43%)
Frame = +2
Query: 20 EGTDRSHEVERFIPGNGMSEVI*SGG*AKHKLRIFYEKRMGAEVDADLLGDEWKGYVLRV 199
E + RSH++ R + + + G + + K + DL G E +
Sbjct: 176 EASSRSHQILRMTVESSAKQFLGKGNSSTLIACVVLMKYLHLNF-VDLAGSE-RASQTAS 233
Query: 200 AGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 325
AG K+G + + +LT +V +SKG + + P RD + R
Sbjct: 234 AGMRLKEGSHINRSLLTLGKVIRQLSKGRNGHIPYRDSKLTR 275
>03_01_0099 +
778521-778736,779521-779775,779831-779924,780064-780116,
780301-780339,781091-781159,781275-781445,781533-781598,
782533-782601,782993-783060,783308-783430,784095-784228,
784412-784506,784600-784644,784755-784814,785548-785599,
785674-785714,785857-785921,786704-786755,787021-787092
Length = 612
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 446 DLDXGELHRQSVQEFPVHLCGQ*PGLRLKG*HQQCNHEQTCVSS 315
D+D ++ + F + GQ P + L G H + NHEQTCV++
Sbjct: 333 DVDNDRINEADKEPFSGNHFGQ-PKI-LSGKHFRLNHEQTCVTA 374
>11_04_0101 -
13469731-13469898,13470163-13470279,13470528-13470702,
13472702-13472804,13472847-13472971,13473252-13473457
Length = 297
Score = 27.9 bits (59), Expect = 4.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 137 YAFHRRYGACAWLIHHF 87
Y HR YG C W++ +F
Sbjct: 93 YKLHRDYGKCVWVLENF 109
>10_01_0171 +
1917520-1918056,1919201-1919336,1921873-1922060,
1922491-1922694,1923913-1924425
Length = 525
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 188 VLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSC 292
VLR+ GND ++ G + NS + ++ + H C
Sbjct: 301 VLRIENGNDGSMITIQHGQVINSGIWIIKTPFHIC 335
>08_02_1482 -
27428208-27428514,27428605-27428906,27431176-27432228,
27432305-27432421,27432510-27432843,27433064-27433188,
27433408-27433475,27433555-27433636,27433753-27433866,
27433942-27434042,27434145-27434234,27434615-27434819
Length = 965
Score = 26.6 bits (56), Expect = 9.2
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 158 DLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 325
DL G E + AG K+G + + +LT +V +SKG + + P RD + R
Sbjct: 224 DLAGSE-RASQTASAGVRLKEGSHINRSLLTLGKVVRQLSKGRNGHIPYRDSKLTR 278
>01_07_0038 -
40661252-40661460,40661743-40661824,40661882-40661904,
40662461-40662536,40662590-40662658,40664047-40664181
Length = 197
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -1
Query: 193 ENITFPFVA*KICINFSAHTLFIEDTELVLGSSTTSNNF*HPVAGYE 53
E+++ P V C+ + ++TL ++ +L S N+F HP GYE
Sbjct: 39 EDLSLPSVEYWNCLAWMSYTLRLQLRRNILLSMDV-NDFGHPTIGYE 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,748,079
Number of Sequences: 37544
Number of extensions: 273606
Number of successful extensions: 656
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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