Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_J01
(549 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac... 151 9e-38
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch... 151 9e-38
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17... 38 0.001
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 27 2.4
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 26 3.2
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr... 25 5.6
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 7.3
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 9.7
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 9.7
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb... 25 9.7
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 25 9.7
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 9.7
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 9.7
>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 151 bits (365), Expect = 9e-38
Identities = 64/91 (70%), Positives = 79/91 (86%)
Frame = +2
Query: 179 YIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLS 358
Y+DKKCPF G VSIRGRILTG V KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+S
Sbjct: 50 YVDKKCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVS 109
Query: 359 PCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 451
P FR + GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 110 PAFR-INEGDVVTVGQCRPLSKTVRFNVLRV 139
Score = 33.9 bits (74), Expect = 0.016
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +3
Query: 96 RYHKDVGLGFKTPREAV 146
R++KDVGLGFKTP EA+
Sbjct: 30 RWYKDVGLGFKTPAEAI 46
>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 151 bits (365), Expect = 9e-38
Identities = 64/91 (70%), Positives = 79/91 (86%)
Frame = +2
Query: 179 YIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLS 358
Y+DKKCPF G VSIRGRILTG V KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+S
Sbjct: 50 YVDKKCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVS 109
Query: 359 PCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 451
P FR + GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 110 PAFR-INEGDVVTVGQCRPLSKTVRFNVLRV 139
Score = 33.9 bits (74), Expect = 0.016
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +3
Query: 96 RYHKDVGLGFKTPREAV 146
R++KDVGLGFKTP EA+
Sbjct: 30 RWYKDVGLGFKTPAEAI 46
>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 90
Score = 37.5 bits (83), Expect = 0.001
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +2
Query: 239 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPL 418
G+V M +T +R + P ++ +++N V + +GD VTI CRP
Sbjct: 7 GIVISRAMPKTAKVRVAKEKFHPVVKKYVTQYQNYMVQDD---LNCNVGDAVTIQPCRPR 63
Query: 419 SKTVRFNVLKV 451
S T RF ++K+
Sbjct: 64 SATKRFEIIKI 74
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -3
Query: 391 DVSDFHVPEARR*MNRHVPVSL 326
DV+ + VPEARR RH PV L
Sbjct: 481 DVNYYPVPEARRSNMRHRPVGL 502
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 3.2
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = -1
Query: 489 NFLKDFLEPLPLET---FSTLNLTVLESGLH 406
N LKD +EPL L T F++L +V +S LH
Sbjct: 323 NVLKDSIEPLLLPTVNKFASLGWSVDDSNLH 353
>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 514
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/21 (47%), Positives = 17/21 (80%), Gaps = 2/21 (9%)
Frame = +1
Query: 484 KVLNKLTFY--SYLSLYSNGK 540
++L+++T+Y SYLS+Y GK
Sbjct: 239 RILSQITYYLYSYLSVYKQGK 259
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 374 VEIGDIVTIGECRPLSKTVRFNVL 445
V +GDIVTI C + R +VL
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVL 137
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 11 EENVIPKATTVFLNRKKGIGV 73
EENV PK +F+ RK IG+
Sbjct: 783 EENVFPKNLILFIFRKCVIGI 803
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 478 FQKVLNKLTFYSYLSLYSNG 537
F +L K+TF YL+L+SNG
Sbjct: 1164 FNSIL-KVTFDEYLALFSNG 1182
>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -3
Query: 376 HVPEARR*MNRHVPVSLLKSVVFRQVMEII 287
H PE NR ++++K+V+F+Q+ E++
Sbjct: 49 HPPEEIARRNRVPQMAVVKAVLFQQLCEVV 78
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 24.6 bits (51), Expect = 9.7
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Frame = -3
Query: 346 RHVPVSLLKSVVFRQVMEIIAPDNNCSLHF-------HFLNNACQDTASDG 215
+HV + L FR I DN +LHF H ++ QDT SDG
Sbjct: 699 KHVDFTYLDDEKFRAT---IHDDNTFTLHFFNRHSPFHLISQFLQDTFSDG 746
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 438 LNLTVLESGLHSPIVTMSPISTSLKQGDR*TDMFLCRFSN 319
L+ + + L SP+ T++ + L G D+FL FSN
Sbjct: 6 LHESAIPKELDSPVTTIALYNNHLYFGTEGGDVFLYNFSN 45
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = +1
Query: 457 RQRFQ-KIFQKVLNKLTFYSYLS 522
++ FQ KI+Q+ L+KL F YL+
Sbjct: 843 KEHFQNKIYQEQLDKLNFQKYLN 865
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,128,682
Number of Sequences: 5004
Number of extensions: 41658
Number of successful extensions: 125
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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