Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_J01
(549 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 142 1e-34
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529... 134 4e-32
07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044... 132 2e-31
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381... 132 2e-31
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407... 120 8e-28
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 78 5e-15
08_02_0383 - 16539472-16539633,16543044-16543205 44 6e-05
04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062... 37 0.012
01_05_0586 + 23443371-23444645 29 2.4
05_03_0425 - 13808840-13809414,13809552-13809765,13810268-138113... 29 3.2
11_06_0289 - 21969248-21973516 28 5.6
11_06_0185 + 21018045-21022307 28 5.6
03_05_0248 + 22348504-22348568,22349064-22349371,22349476-223500... 28 5.6
01_05_0509 + 22811184-22812038,22813493-22814020 28 5.6
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 27 9.9
05_07_0035 - 27221338-27221433,27221510-27221599,27222056-272221... 27 9.9
05_04_0355 - 20577189-20577275,20578001-20578129,20578252-205783... 27 9.9
04_03_0631 - 18190195-18190686,18190866-18191066 27 9.9
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 142 bits (345), Expect = 1e-34
Identities = 63/92 (68%), Positives = 75/92 (81%)
Frame = +2
Query: 176 TYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHL 355
TYIDKKCPFTG VSIRGRI+ G KM RTI++RR+YLH++ KY R+EKRH N+ H+
Sbjct: 44 TYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHI 103
Query: 356 SPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 451
SPCFR V+ GD V IG+CRPLSKTVRFNV+KV
Sbjct: 104 SPCFR-VKEGDHVIIGQCRPLSKTVRFNVIKV 134
Score = 34.7 bits (76), Expect = 0.049
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +3
Query: 96 RYHKDVGLGFKTPREAVE 149
R+ K++GLGFKTPREA+E
Sbjct: 25 RFWKNIGLGFKTPREAIE 42
>04_04_0417 -
25052305-25052398,25052583-25052672,25052740-25052905,
25053547-25053647,25053735-25053775,25054170-25054181
Length = 167
Score = 134 bits (324), Expect = 4e-32
Identities = 64/99 (64%), Positives = 75/99 (75%), Gaps = 7/99 (7%)
Frame = +2
Query: 176 TYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNR-------FEKRH 334
TYIDKKCPFTG VSIRGRI+ G KM RTI++RR+YLH++ KY R +EKRH
Sbjct: 53 TYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQVNLVAGYEKRH 112
Query: 335 RNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 451
N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 113 SNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 150
Score = 34.7 bits (76), Expect = 0.049
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +3
Query: 96 RYHKDVGLGFKTPREAVE 149
R+ K++GLGFKTPREA+E
Sbjct: 34 RFWKNIGLGFKTPREAIE 51
>07_03_0920 -
22603868-22603964,22604110-22604222,22604281-22604429,
22604732-22604832,22604917-22604957,22605584-22605595
Length = 170
Score = 132 bits (319), Expect = 2e-31
Identities = 64/101 (63%), Positives = 75/101 (74%), Gaps = 9/101 (8%)
Frame = +2
Query: 176 TYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYN---------RFEK 328
TYIDKKCPFTG VSIRGRI+ G KM RTI++RR+YLH++ KY R+EK
Sbjct: 53 TYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQGANLPPCRYEK 112
Query: 329 RHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 451
RH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 113 RHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 152
Score = 34.3 bits (75), Expect = 0.065
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +3
Query: 96 RYHKDVGLGFKTPREAVE 149
R+ K +GLGFKTPREA+E
Sbjct: 34 RFWKSIGLGFKTPREAIE 51
>04_04_1134 +
31137326-31137337,31137964-31138004,31138089-31138189,
31138489-31138637,31138696-31138808,31138954-31139050
Length = 170
Score = 132 bits (319), Expect = 2e-31
Identities = 64/101 (63%), Positives = 75/101 (74%), Gaps = 9/101 (8%)
Frame = +2
Query: 176 TYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYN---------RFEK 328
TYIDKKCPFTG VSIRGRI+ G KM RTI++RR+YLH++ KY R+EK
Sbjct: 53 TYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQGANLPPCRYEK 112
Query: 329 RHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 451
RH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 113 RHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 152
Score = 34.3 bits (75), Expect = 0.065
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +3
Query: 96 RYHKDVGLGFKTPREAVE 149
R+ K +GLGFKTPREA+E
Sbjct: 34 RFWKSIGLGFKTPREAIE 51
>04_04_1135 +
31140032-31140043,31140552-31140592,31140680-31140780,
31141113-31141419,31141565-31141661
Length = 185
Score = 120 bits (289), Expect = 8e-28
Identities = 64/116 (55%), Positives = 75/116 (64%), Gaps = 24/116 (20%)
Frame = +2
Query: 176 TYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYN------------- 316
TYIDKKCPFTG VSIRGRI+ G KM RTI++RR+YLH++ KY
Sbjct: 53 TYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQVNNYGFYLCFF 112
Query: 317 -----------RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 451
R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 113 SFFFPISDLGCRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 167
Score = 34.3 bits (75), Expect = 0.065
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +3
Query: 96 RYHKDVGLGFKTPREAVE 149
R+ K +GLGFKTPREA+E
Sbjct: 34 RFWKSIGLGFKTPREAIE 51
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 77.8 bits (183), Expect = 5e-15
Identities = 32/48 (66%), Positives = 38/48 (79%)
Frame = +2
Query: 176 TYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNR 319
TYIDKKCPFTG VSIRGRI+ G KM RTI++RR+YLH++ KY R
Sbjct: 53 TYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQR 100
Score = 34.3 bits (75), Expect = 0.065
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +3
Query: 96 RYHKDVGLGFKTPREAVE 149
R+ K +GLGFKTPREA+E
Sbjct: 34 RFWKSIGLGFKTPREAIE 51
>08_02_0383 - 16539472-16539633,16543044-16543205
Length = 107
Score = 44.4 bits (100), Expect = 6e-05
Identities = 25/73 (34%), Positives = 37/73 (50%)
Frame = +2
Query: 233 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECR 412
+ G+V KMQ+++V+ D L + YNR+ KR H D IGD V + R
Sbjct: 4 VVGIVVSNKMQKSVVVAVDRLFHHKMYNRYVKRTSKFMAHDET--EDCNIGDRVKLDPSR 61
Query: 413 PLSKTVRFNVLKV 451
PLSK + V ++
Sbjct: 62 PLSKRKHWVVAEI 74
>04_04_1693 + 35404336-35404515,35405732-35406019,35406189-35406278,
35406487-35406564,35406638-35406718,35407300-35407350,
35407788-35407933,35408169-35408235,35408328-35408387,
35408472-35408501,35408776-35408835,35408936-35409052,
35409790-35409903,35410068-35410166,35410572-35410697,
35410774-35410848,35410958-35411029,35411167-35411277,
35411760-35411843,35413149-35413256,35414207-35414308,
35414393-35414455,35414524-35414598,35414901-35414972,
35415063-35415187,35415251-35415302,35415380-35415448,
35415525-35415540,35415941-35415989,35416607-35417180
Length = 1077
Score = 36.7 bits (81), Expect = 0.012
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = +2
Query: 233 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECR 412
LTG V K +T+ + L PKY R E+ + H P ++GD+V + R
Sbjct: 972 LTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAH-DPD-NQFKVGDVVELRRSR 1029
Query: 413 PLSKTVRF 436
P+SKT F
Sbjct: 1030 PISKTKHF 1037
>01_05_0586 + 23443371-23444645
Length = 424
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 279 SGAIISITCLNTTDLRSDTGTCLFIYRLASGTWKS 383
+GA S TCLN T+ S G Y ++ G W S
Sbjct: 35 TGASFSRTCLNLTNAVSGIGVLSMPYAVSQGGWLS 69
>05_03_0425 -
13808840-13809414,13809552-13809765,13810268-13811317,
13811616-13811687,13812075-13812334,13812647-13812731
Length = 751
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 1 NSARGERHSKSNNCLLESQERHRREXAAVSLLGTT 105
N R + ++CLL + RHRR AA +L +T
Sbjct: 153 NQREMHREADHHHCLLATLARHRRLAAAATLFSST 187
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 245 VQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 379
++KM + T + +H LPK+ E + LS CF +VE
Sbjct: 1251 LEKMVLSSTCIESISGVHGLPKFEELELNSSSCGRLLSSCFYNVE 1295
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 245 VQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 379
++KM + T + +H LPK+ E + LS CF +VE
Sbjct: 1249 LEKMVLSSTCIESISGVHGLPKFEELELNSSSCGRLLSSCFYNVE 1293
>03_05_0248 +
22348504-22348568,22349064-22349371,22349476-22350039,
22350082-22350128,22351244-22351715,22352349-22352611
Length = 572
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 197 PFTGNVSIRGRILTGVVQKM-KMQRTIVIRRDYLHYLPKY 313
PFTG++S G + + KM + +V +DYLH K+
Sbjct: 471 PFTGDMSQSGDAIVAALMKMLAINPHLVTDKDYLHTAMKH 510
>01_05_0509 + 22811184-22812038,22813493-22814020
Length = 460
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 276 LSGAIISITCLNTTDLRSDTGTCLFIYRLASGTWKSETSSQLASA 410
++GA +CLN +++ S G Y L+ G W S T + A
Sbjct: 65 MTGASFGRSCLNLSNIISGIGMLSVPYALSQGGWLSLTLFTMVGA 109
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 229 YPDRRCSENENAANNCYQARLSPLPA*IQQI*EATQEHVCSSIAL 363
Y DRR ++E A Y+A+LS + Q + E T + +S A+
Sbjct: 205 YLDRRPDQSEVVATQDYEAQLSQISEMGQSVAEGTSDDPSASAAV 249
>05_07_0035 -
27221338-27221433,27221510-27221599,27222056-27222115,
27222231-27222523,27222601-27222757,27222917-27223261,
27223890-27224020,27224119-27224596,27224817-27225563
Length = 798
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 93 LRYHKDVGLGFKTPREAVEKNXGG 164
L++H+D+ KT E VE+ GG
Sbjct: 231 LKFHEDLAHDMKTAHELVERRTGG 254
>05_04_0355 -
20577189-20577275,20578001-20578129,20578252-20578371,
20578505-20578741,20578983-20579258,20579375-20579508,
20580006-20581632
Length = 869
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 16 ERHSKSNNCLLESQERHRREXAAVSLLG 99
ERHS+ +CLLE + R A + +G
Sbjct: 245 ERHSRGVSCLLEERSRREETVALIRNVG 272
>04_03_0631 - 18190195-18190686,18190866-18191066
Length = 230
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +3
Query: 318 DLRSDTGTCLFIYR-LASGTWKSETSSQLASA 410
D +S TGTC F+ R L S ++K + S L++A
Sbjct: 87 DRKSTTGTCQFLGRSLVSWSFKKQNSIALSTA 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,890,661
Number of Sequences: 37544
Number of extensions: 276534
Number of successful extensions: 604
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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