Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_J01
(549 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X06617-1|CAA29834.1| 158|Homo sapiens protein ( Human mRNA for ... 188 1e-47
BC100025-1|AAI00026.1| 158|Homo sapiens RPS11 protein protein. 188 1e-47
BC070224-1|AAH70224.1| 158|Homo sapiens ribosomal protein S11 p... 188 1e-47
BC016378-1|AAH16378.1| 158|Homo sapiens ribosomal protein S11 p... 188 1e-47
BC010028-1|AAH10028.1| 158|Homo sapiens ribosomal protein S11 p... 188 1e-47
BC007945-1|AAH07945.1| 158|Homo sapiens RPS11 protein protein. 188 1e-47
BC007603-1|AAH07603.1| 158|Homo sapiens ribosomal protein S11 p... 188 1e-47
BC007283-1|AAH07283.1| 158|Homo sapiens ribosomal protein S11 p... 188 1e-47
AB028893-2|BAA88215.1| 158|Homo sapiens ribosomal protein S11 p... 188 1e-47
AB007152-1|BAA25818.1| 83|Homo sapiens ribosomal protein S11 p... 142 7e-34
U52144-1|AAC50455.1| 419|Homo sapiens isocitrate dehydrogenase ... 42 0.001
>X06617-1|CAA29834.1| 158|Homo sapiens protein ( Human mRNA for
ribosomal protein S11. ).
Length = 158
Score = 188 bits (458), Expect = 1e-47
Identities = 85/92 (92%), Positives = 90/92 (97%)
Frame = +2
Query: 176 TYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHL 355
TYIDKKCPFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHL
Sbjct: 54 TYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHL 113
Query: 356 SPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 451
SPCFRDV+IGDIVT+GECRPLSKTVRFNVLKV
Sbjct: 114 SPCFRDVQIGDIVTVGECRPLSKTVRFNVLKV 145
Score = 36.7 bits (81), Expect = 0.054
Identities = 13/18 (72%), Positives = 18/18 (100%)
Frame = +3
Query: 96 RYHKDVGLGFKTPREAVE 149
RY+K++GLGFKTP+EA+E
Sbjct: 35 RYYKNIGLGFKTPKEAIE 52
>BC100025-1|AAI00026.1| 158|Homo sapiens RPS11 protein protein.
Length = 158
Score = 188 bits (458), Expect = 1e-47
Identities = 85/92 (92%), Positives = 90/92 (97%)
Frame = +2
Query: 176 TYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHL 355
TYIDKKCPFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHL
Sbjct: 54 TYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHL 113
Query: 356 SPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 451
SPCFRDV+IGDIVT+GECRPLSKTVRFNVLKV
Sbjct: 114 SPCFRDVQIGDIVTVGECRPLSKTVRFNVLKV 145
Score = 36.7 bits (81), Expect = 0.054
Identities = 13/18 (72%), Positives = 18/18 (100%)
Frame = +3
Query: 96 RYHKDVGLGFKTPREAVE 149
RY+K++GLGFKTP+EA+E
Sbjct: 35 RYYKNIGLGFKTPKEAIE 52
>BC070224-1|AAH70224.1| 158|Homo sapiens ribosomal protein S11
protein.
Length = 158
Score = 188 bits (458), Expect = 1e-47
Identities = 85/92 (92%), Positives = 90/92 (97%)
Frame = +2
Query: 176 TYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHL 355
TYIDKKCPFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHL
Sbjct: 54 TYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHL 113
Query: 356 SPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 451
SPCFRDV+IGDIVT+GECRPLSKTVRFNVLKV
Sbjct: 114 SPCFRDVQIGDIVTVGECRPLSKTVRFNVLKV 145
Score = 36.7 bits (81), Expect = 0.054
Identities = 13/18 (72%), Positives = 18/18 (100%)
Frame = +3
Query: 96 RYHKDVGLGFKTPREAVE 149
RY+K++GLGFKTP+EA+E
Sbjct: 35 RYYKNIGLGFKTPKEAIE 52
>BC016378-1|AAH16378.1| 158|Homo sapiens ribosomal protein S11
protein.
Length = 158
Score = 188 bits (458), Expect = 1e-47
Identities = 85/92 (92%), Positives = 90/92 (97%)
Frame = +2
Query: 176 TYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHL 355
TYIDKKCPFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHL
Sbjct: 54 TYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHL 113
Query: 356 SPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 451
SPCFRDV+IGDIVT+GECRPLSKTVRFNVLKV
Sbjct: 114 SPCFRDVQIGDIVTVGECRPLSKTVRFNVLKV 145
Score = 36.7 bits (81), Expect = 0.054
Identities = 13/18 (72%), Positives = 18/18 (100%)
Frame = +3
Query: 96 RYHKDVGLGFKTPREAVE 149
RY+K++GLGFKTP+EA+E
Sbjct: 35 RYYKNIGLGFKTPKEAIE 52
>BC010028-1|AAH10028.1| 158|Homo sapiens ribosomal protein S11
protein.
Length = 158
Score = 188 bits (458), Expect = 1e-47
Identities = 85/92 (92%), Positives = 90/92 (97%)
Frame = +2
Query: 176 TYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHL 355
TYIDKKCPFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHL
Sbjct: 54 TYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHL 113
Query: 356 SPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 451
SPCFRDV+IGDIVT+GECRPLSKTVRFNVLKV
Sbjct: 114 SPCFRDVQIGDIVTVGECRPLSKTVRFNVLKV 145
Score = 36.7 bits (81), Expect = 0.054
Identities = 13/18 (72%), Positives = 18/18 (100%)
Frame = +3
Query: 96 RYHKDVGLGFKTPREAVE 149
RY+K++GLGFKTP+EA+E
Sbjct: 35 RYYKNIGLGFKTPKEAIE 52
>BC007945-1|AAH07945.1| 158|Homo sapiens RPS11 protein protein.
Length = 158
Score = 188 bits (458), Expect = 1e-47
Identities = 85/92 (92%), Positives = 90/92 (97%)
Frame = +2
Query: 176 TYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHL 355
TYIDKKCPFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHL
Sbjct: 54 TYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHL 113
Query: 356 SPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 451
SPCFRDV+IGDIVT+GECRPLSKTVRFNVLKV
Sbjct: 114 SPCFRDVQIGDIVTVGECRPLSKTVRFNVLKV 145
Score = 36.7 bits (81), Expect = 0.054
Identities = 13/18 (72%), Positives = 18/18 (100%)
Frame = +3
Query: 96 RYHKDVGLGFKTPREAVE 149
RY+K++GLGFKTP+EA+E
Sbjct: 35 RYYKNIGLGFKTPKEAIE 52
>BC007603-1|AAH07603.1| 158|Homo sapiens ribosomal protein S11
protein.
Length = 158
Score = 188 bits (458), Expect = 1e-47
Identities = 85/92 (92%), Positives = 90/92 (97%)
Frame = +2
Query: 176 TYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHL 355
TYIDKKCPFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHL
Sbjct: 54 TYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHL 113
Query: 356 SPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 451
SPCFRDV+IGDIVT+GECRPLSKTVRFNVLKV
Sbjct: 114 SPCFRDVQIGDIVTVGECRPLSKTVRFNVLKV 145
Score = 36.7 bits (81), Expect = 0.054
Identities = 13/18 (72%), Positives = 18/18 (100%)
Frame = +3
Query: 96 RYHKDVGLGFKTPREAVE 149
RY+K++GLGFKTP+EA+E
Sbjct: 35 RYYKNIGLGFKTPKEAIE 52
>BC007283-1|AAH07283.1| 158|Homo sapiens ribosomal protein S11
protein.
Length = 158
Score = 188 bits (458), Expect = 1e-47
Identities = 85/92 (92%), Positives = 90/92 (97%)
Frame = +2
Query: 176 TYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHL 355
TYIDKKCPFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHL
Sbjct: 54 TYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHL 113
Query: 356 SPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 451
SPCFRDV+IGDIVT+GECRPLSKTVRFNVLKV
Sbjct: 114 SPCFRDVQIGDIVTVGECRPLSKTVRFNVLKV 145
Score = 36.7 bits (81), Expect = 0.054
Identities = 13/18 (72%), Positives = 18/18 (100%)
Frame = +3
Query: 96 RYHKDVGLGFKTPREAVE 149
RY+K++GLGFKTP+EA+E
Sbjct: 35 RYYKNIGLGFKTPKEAIE 52
>AB028893-2|BAA88215.1| 158|Homo sapiens ribosomal protein S11
protein.
Length = 158
Score = 188 bits (458), Expect = 1e-47
Identities = 85/92 (92%), Positives = 90/92 (97%)
Frame = +2
Query: 176 TYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHL 355
TYIDKKCPFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHL
Sbjct: 54 TYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHL 113
Query: 356 SPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 451
SPCFRDV+IGDIVT+GECRPLSKTVRFNVLKV
Sbjct: 114 SPCFRDVQIGDIVTVGECRPLSKTVRFNVLKV 145
Score = 36.7 bits (81), Expect = 0.054
Identities = 13/18 (72%), Positives = 18/18 (100%)
Frame = +3
Query: 96 RYHKDVGLGFKTPREAVE 149
RY+K++GLGFKTP+EA+E
Sbjct: 35 RYYKNIGLGFKTPKEAIE 52
>AB007152-1|BAA25818.1| 83|Homo sapiens ribosomal protein S11
protein.
Length = 83
Score = 142 bits (344), Expect = 7e-34
Identities = 64/70 (91%), Positives = 68/70 (97%)
Frame = +2
Query: 242 VVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLS 421
VV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGDIVT+GECRPLS
Sbjct: 1 VVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLS 60
Query: 422 KTVRFNVLKV 451
KTVRFNVLKV
Sbjct: 61 KTVRFNVLKV 70
>U52144-1|AAC50455.1| 419|Homo sapiens isocitrate dehydrogenase
protein.
Length = 419
Score = 41.9 bits (94), Expect = 0.001
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = -3
Query: 451 DLQYIEPDCLGKRPALANCDDVSDFHV 371
DL+++E CL +RPALA+CDDV+D V
Sbjct: 18 DLEHVEAHCLAQRPALAHCDDVTDLDV 44
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,225,125
Number of Sequences: 237096
Number of extensions: 1483721
Number of successful extensions: 6492
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6492
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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