Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_J01
         (549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...   157   6e-39
AL031629-5|CAA20979.1|   99|Caenorhabditis elegans Hypothetical ...    29   2.2  
Z98853-4|CAB57905.1|  301|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U41268-2|AAA82434.1|  201|Caenorhabditis elegans Temporarily ass...    27   8.9  
U21308-2|AAB93313.3|  507|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical ...    27   8.9  
AB006659-1|BAA21847.1|  655|Caenorhabditis elegans E6-AP ubiquit...    27   8.9  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score =  157 bits (380), Expect = 6e-39
 Identities = 70/92 (76%), Positives = 78/92 (84%)
 Frame = +2

Query: 176 TYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHL 355
           TYIDKKCP+ GNV IRG ILTGVV K KM RTIV+RRDYLHY+ KY R+EKRH+N+  H 
Sbjct: 51  TYIDKKCPWAGNVPIRGMILTGVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRHKNVPAHC 110

Query: 356 SPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 451
           SP FRD+  GD+VTIGECRPLSKTVRFNVLKV
Sbjct: 111 SPAFRDIHPGDLVTIGECRPLSKTVRFNVLKV 142



 Score = 32.7 bits (71), Expect = 0.18
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = +3

Query: 96  RYHKDVGLGFKTPREAVE 149
           RY ++VGLGFK PR+AVE
Sbjct: 32  RYIREVGLGFKAPRDAVE 49


>AL031629-5|CAA20979.1|   99|Caenorhabditis elegans Hypothetical
           protein Y106G6D.6 protein.
          Length = 99

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 246 FRK*KCSEQLLSGAIISITCLNTTDL 323
           F   KC EQ +SG +++  C NT DL
Sbjct: 45  FHANKCFEQNVSGQLLTFCCCNTDDL 70


>Z98853-4|CAB57905.1|  301|Caenorhabditis elegans Hypothetical
           protein R08A2.4 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 340 VPVSLLKSVVFRQVMEIIAPDNNCSLHFHFLNNACQD 230
           + +SLL+ +   QV+  I P+   +L+FH  +  C D
Sbjct: 148 IDISLLEYLQAVQVLTYIHPETLKTLNFHIYSEKCND 184


>U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical
           protein C53B7.3 protein.
          Length = 243

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 280 DNNCSLHFHFLNNACQDTASD 218
           DN C L+   +NN CQ T S+
Sbjct: 169 DNTCGLNQRCVNNMCQSTGSN 189


>U41268-2|AAA82434.1|  201|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 18 protein.
          Length = 201

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -3

Query: 517 DTNRKSVYLELFERFFGTFAFRDLQYIEPDCLGKRPALANCDDVSDFHVPEARR*MNRH 341
           DT      ++L+      F   D ++IEP  LG+R       D SD ++P AR   +R+
Sbjct: 143 DTKNVKTAIDLYRNGCIDFKTLDKKWIEPTALGRRG-----KDWSDVYLPAARYGAHRY 196


>U21308-2|AAB93313.3|  507|Caenorhabditis elegans Hypothetical
           protein ZK1290.6 protein.
          Length = 507

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 93  LRYHKDVGLGFKTPREA-VEKNXGGXGGAHTLIRNVHSRVTCPSE 224
           +R+ ++ G  FK PR A + KN       H L R V + +TCP E
Sbjct: 2   IRWFRNFGALFKKPRGAGLMKNEQ----THNLQRVVQNDITCPEE 42


>AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical
           protein Y39A1C.2 protein.
          Length = 1066

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
 Frame = -3

Query: 310 FRQVMEIIAPDNNCSLHFHFLNNACQDTAS---DGHVTREWTFLINVCAXXXXXXFFSTA 140
           F  + ++  P    ++   F+N    D A    DG V +E+  L            FST 
Sbjct: 697 FNHLSKLTIPALKSTIRVKFVNEQGLDEAGIDQDG-VFKEFLELTLKKVFDPQLNLFSTT 755

Query: 139 SRGVLKPRPTS 107
           S GVL P PTS
Sbjct: 756 STGVLYPSPTS 766


>AB006659-1|BAA21847.1|  655|Caenorhabditis elegans E6-AP
           ubiquitin-protein ligase protein.
          Length = 655

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
 Frame = -3

Query: 310 FRQVMEIIAPDNNCSLHFHFLNNACQDTAS---DGHVTREWTFLINVCAXXXXXXFFSTA 140
           F  + ++  P    ++   F+N    D A    DG V +E+  L            FST 
Sbjct: 285 FNHLSKLTIPALKSTIRVKFVNEQGLDEAGIDQDG-VFKEFLELTLKKVFDPQLNLFSTT 343

Query: 139 SRGVLKPRPTS 107
           S GVL P PTS
Sbjct: 344 STGVLYPSPTS 354


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,971,308
Number of Sequences: 27780
Number of extensions: 240664
Number of successful extensions: 622
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)