Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_I23
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    27   1.4  
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    27   1.9  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   2.5  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    25   5.7  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   7.5  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.5  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    25   7.5  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    24   9.9  

>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -1

Query: 98  DTVVLVIVTEC-DISAQVVKDGVKEKQ 21
           DT+++V V EC D SA+ VKD ++ +Q
Sbjct: 459 DTLIIVDVIECDDPSARAVKDRMESEQ 485


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 301 CLLISCLVSMSTASLLSKTIYEVIYHGFAFIFYLCA 408
           C ++  +V +  A+L S   Y+  Y+GF+F+ Y  A
Sbjct: 133 CYVLFAIVCLLAAALTSSP-YKWAYYGFSFVGYFIA 167


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 376  DKSPHISFLI--IRRPLTSTPDMISVNKKCLLRKLLQLTGKIVQASV 242
            D SP ++ L+  +R+P    P  +  N   LL KLL    K + AS+
Sbjct: 1222 DSSPLLNLLVSFLRKPNRLVPSNVKSNILVLLCKLLPTNTKWLHASI 1268


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 349 IIRRPLTSTPDMISVNKKCLLRKLLQLTGKIVQASVHIL 233
           ++   +  + DM++  KK  L   + L  K+V+  +HIL
Sbjct: 706 VVEATMCYSGDMLNPKKKYNLDYYVNLVDKMVEMGIHIL 744


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 6   RRIFSLFFFNSVFYNLSRNVALCYNHEDHC 95
           R++FS  F N+V Y  S+ +   +   D C
Sbjct: 557 RKLFSSLFSNNVSYKKSKKLKRTHTVHDKC 586


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 203 TTPTHAAPSSNCANFSKPGNEPKYPVLTNTDVPE 102
           T P+++  + N    S P    ++P+L N   PE
Sbjct: 351 TVPSNSPATLNSYTTSVPSGMSRHPMLMNPSTPE 384


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +3

Query: 9   RIFSLFFFNSVFYNLSRNVALCYNHEDHCVDFRHVCVRQYRILGLVARFTKIGTVATGC 185
           RI S++    + ++  RN+A+ +   +     R +CV    +LG+     ++  V +GC
Sbjct: 170 RIRSIYESKLIEFDNERNLAVFWASCEAGTYMRTLCVHLGLLLGVGGHMQELRRVRSGC 228


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 184 HPVATVPILVNRATSPS 134
           HPVA VP+  N AT+ S
Sbjct: 178 HPVADVPVTNNTATTTS 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,870,027
Number of Sequences: 5004
Number of extensions: 36578
Number of successful extensions: 105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)