Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_I23
         (464 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0213 - 1703682-1703696,1703824-1703919,1704033-1704104,170...    28   4.3  
06_01_0569 + 4019254-4021996,4022121-4022272,4022356-4022427,402...    27   7.4  
12_02_0548 - 20315842-20316017,20316382-20316574                       27   9.8  
02_01_0502 - 3659564-3659660,3659923-3660061,3660161-3660238,366...    27   9.8  
01_06_0229 - 27709786-27710344,27711513-27711642,27712782-277128...    27   9.8  

>08_01_0213 -
           1703682-1703696,1703824-1703919,1704033-1704104,
           1704372-1704444,1704508-1704710,1705058-1706330,
           1706800-1706868,1706940-1707088,1707275-1707487,
           1708385-1708669
          Length = 815

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 304 NKKCLLRKLLQLTGKIVQASVHILWSSRDPCNS*RHQRML 185
           NK+C L   L  TGK+ +A  ++L S  D C+   H R L
Sbjct: 249 NKECNLAICLIKTGKVAEAK-YLLQSIPDNCSDESHVRSL 287


>06_01_0569 +
           4019254-4021996,4022121-4022272,4022356-4022427,
           4022521-4022673,4022749-4022912,4022990-4023137,
           4023530-4023652,4023774-4023861,4023951-4024129
          Length = 1273

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 172 TVPILVNRATSPSIRY*RTQTCRKS 98
           T+P++++ AT P++RY     C+K+
Sbjct: 458 TIPMVISSATMPALRYDDCTMCQKA 482


>12_02_0548 - 20315842-20316017,20316382-20316574
          Length = 122

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 331 STASLLSKTIYEVIY-HGFAFIFYLCAGLTLLIEVNH 438
           S+  + +KT   V Y HG     Y   G++LL EVNH
Sbjct: 38  SSGPVCTKTEAHVAYMHGLGHSLYGWKGISLLGEVNH 74


>02_01_0502 -
           3659564-3659660,3659923-3660061,3660161-3660238,
           3660486-3660654,3660757-3660873,3660956-3661102,
           3661203-3661388,3661472-3661720,3662196-3662432,
           3662511-3662673,3662748-3662866,3662976-3663068,
           3663595-3663735,3663813-3663896,3663974-3664084,
           3664162-3664260,3664501-3664623,3664908-3664958,
           3665152-3665275,3665357-3665514,3665595-3665709,
           3665931-3666060,3666163-3666328,3667047-3667136,
           3667650-3667857,3668270-3668439,3668542-3668577
          Length = 1199

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -3

Query: 441 LMIHFYEQRKTGAEIKNECKPMINHLIYRF 352
           LM+H+  + K+ AE+K EC  ++  +++RF
Sbjct: 161 LMVHYTFEGKS-AEVKCECLDILGDVLHRF 189


>01_06_0229 -
           27709786-27710344,27711513-27711642,27712782-27712869,
           27714070-27714363
          Length = 356

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 71  LLQSRGPLCRLPARLCSSIPDTWARC 148
           LL+SRGP     A  C S  +TW  C
Sbjct: 227 LLKSRGPRRMYCALECPSTQETWENC 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,930,108
Number of Sequences: 37544
Number of extensions: 232874
Number of successful extensions: 564
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)