Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_I23
         (464 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical p...    27   5.0  
AF003141-7|AAK21481.1|  411|Caenorhabditis elegans Hypothetical ...    27   5.0  
Z99281-6|CAB54458.2|  625|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z99281-5|CAB54457.1|  553|Caenorhabditis elegans Hypothetical pr...    27   6.6  

>Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical
           protein F21G4.2 protein.
          Length = 1573

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 310 ISCLVSMSTASLLSKTIYEVIYHGFAFIFYLCAGLTLLI 426
           ++C++   + SL +  IYE ++ GF +       LTL +
Sbjct: 82  LACILIADSLSLFTVAIYETLFQGFPYAVDFVYPLTLCL 120


>Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical
           protein F21G4.2 protein.
          Length = 1573

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 310 ISCLVSMSTASLLSKTIYEVIYHGFAFIFYLCAGLTLLI 426
           ++C++   + SL +  IYE ++ GF +       LTL +
Sbjct: 82  LACILIADSLSLFTVAIYETLFQGFPYAVDFVYPLTLCL 120


>AF003141-7|AAK21481.1|  411|Caenorhabditis elegans Hypothetical
           protein W02D3.2 protein.
          Length = 411

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 370 SPHISFLIIRRPLTSTPDMISVNKKCLLRKLL 275
           +PH  +L++     +TP + S+ KK  L KLL
Sbjct: 213 APHCDYLVLNVSSPNTPGLRSMQKKSDLEKLL 244


>Z99281-6|CAB54458.2|  625|Caenorhabditis elegans Hypothetical
           protein Y57G11C.9b protein.
          Length = 625

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 131 PVLTNTDVPEVDTVVLVIVTECDISAQVVKDGVKEKQGKNS 9
           P +  T VP+    + +     DIS + +K+ + EK GK S
Sbjct: 38  PRINETQVPQSKHTIFIRGLHGDISTEEIKEYIGEKVGKIS 78


>Z99281-5|CAB54457.1|  553|Caenorhabditis elegans Hypothetical
           protein Y57G11C.9a protein.
          Length = 553

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 131 PVLTNTDVPEVDTVVLVIVTECDISAQVVKDGVKEKQGKNS 9
           P +  T VP+    + +     DIS + +K+ + EK GK S
Sbjct: 38  PRINETQVPQSKHTIFIRGLHGDISTEEIKEYIGEKVGKIS 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,477,405
Number of Sequences: 27780
Number of extensions: 212474
Number of successful extensions: 534
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)