Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_I22
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz...    29   0.68 
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    26   4.8  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    25   6.3  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.3  

>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -3

Query: 563 FECVSARSKKARHWFLKTDLMEARLRSLCKSTVLSNHW 450
           F C   + KK  ++ ++T   +  + + C+ TV  N W
Sbjct: 253 FTCGKCKQKKVSYYQMQTRSADEPMTTFCECTVCGNRW 290


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
 Frame = +2

Query: 482 GISTLPPLGPFSRTSVALSSNAQRHTR-----TPSSCEPSRT 592
           G+     +GP  R+  A SSN+ + TR     TP S  P  T
Sbjct: 491 GVPVSAAIGPIKRSVEANSSNSSKKTRKRRKPTPKSFNPKAT 532


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +1

Query: 250 DRTCRSTYVCRSLYILWLCGFL*INVSVHILKKKKKNSRLVHSLFTRSRM 399
           D  C + + C+SL +L   G   +   + + +  +KN R++ ++  R RM
Sbjct: 294 DVRCMAVFECKSLDVLISGGMDMMLAVIPVRQFNRKNHRMISAVPQRPRM 343


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 223 PLTRYNIMGDRTCRSTYVC 279
           PL   +++ +RTC S+Y+C
Sbjct: 339 PLAPMDVLTERTCLSSYLC 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,401,025
Number of Sequences: 5004
Number of extensions: 46911
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)