Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_I22
(598 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 51 1e-06
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 51 1e-06
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 50 2e-06
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 46 3e-05
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 46 3e-05
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 40 0.002
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 40 0.002
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 40 0.002
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 39 0.004
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 38 0.008
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 38 0.010
M55533-1|AAA28305.1| 564|Drosophila melanogaster 5HT-dro seroto... 28 8.4
AY118491-1|AAM49860.1| 564|Drosophila melanogaster LD04507p pro... 28 8.4
AE014297-4690|AAF57104.1| 564|Drosophila melanogaster CG12073-P... 28 8.4
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/62 (35%), Positives = 36/62 (58%)
Frame = +1
Query: 385 TRSRMHALQRIQNRFVRKAVGAQWFERTVDLHRDLNLASIRSVFKNQCRAFFERAETHSN 564
+RS + +QR Q+R +R GA W+ R ++HRDL + + V + + E+ TH+N
Sbjct: 805 SRSNIDIIQRAQSRILRIITGAPWYLRNENIHRDLKIKLVIEVIAEKKTKYNEKLTTHTN 864
Query: 565 PL 570
PL
Sbjct: 865 PL 866
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/62 (35%), Positives = 36/62 (58%)
Frame = +1
Query: 385 TRSRMHALQRIQNRFVRKAVGAQWFERTVDLHRDLNLASIRSVFKNQCRAFFERAETHSN 564
+RS + +QR Q+R +R GA W+ R ++HRDL + + V + + E+ TH+N
Sbjct: 805 SRSNIDIIQRAQSRILRIITGAPWYLRNENIHRDLKIKLVIEVIAEKKTKYNEKLTTHTN 864
Query: 565 PL 570
PL
Sbjct: 865 PL 866
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown protein.
Length = 908
Score = 50.0 bits (114), Expect = 2e-06
Identities = 26/84 (30%), Positives = 37/84 (44%)
Frame = +1
Query: 319 INVSVHILKKKKKNSRLVHSLFTRSRMHALQRIQNRFVRKAVGAQWFERTVDLHRDLNLA 498
+ + IL K + L S + +Q IQN+ R G +WF R LHRDL LA
Sbjct: 792 LTIYKQILAPNWKYGCQIWGLACDSHIKRIQAIQNKVARLITGCEWFVRNTTLHRDLKLA 851
Query: 499 SIRSVFKNQCRAFFERAETHSNPL 570
++ + +R E H N L
Sbjct: 852 TVFDEINKHSSRYHDRLERHRNRL 875
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 46.4 bits (105), Expect = 3e-05
Identities = 19/67 (28%), Positives = 37/67 (55%)
Frame = +1
Query: 370 VHSLFTRSRMHALQRIQNRFVRKAVGAQWFERTVDLHRDLNLASIRSVFKNQCRAFFERA 549
V+ + +S ++ ++ +Q + +R+ GA W+ RT D+ RDL + + +N + + ER
Sbjct: 814 VYGIAAKSHLNKIRILQAKTLRRISGAPWYMRTRDIERDLKVPKLGDKLQNIAQKYMERL 873
Query: 550 ETHSNPL 570
H N L
Sbjct: 874 NVHPNSL 880
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 46.4 bits (105), Expect = 3e-05
Identities = 19/67 (28%), Positives = 37/67 (55%)
Frame = +1
Query: 370 VHSLFTRSRMHALQRIQNRFVRKAVGAQWFERTVDLHRDLNLASIRSVFKNQCRAFFERA 549
V+ + +S ++ ++ +Q + +R+ GA W+ RT D+ RDL + + +N + + ER
Sbjct: 616 VYGIAAKSHLNKIRILQAKTLRRISGAPWYMRTRDIERDLKVPKLGDKLQNIAQKYLERL 675
Query: 550 ETHSNPL 570
H N L
Sbjct: 676 NVHPNSL 682
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 40.3 bits (90), Expect = 0.002
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = +1
Query: 376 SLFTRSRMHALQRIQNRFVRKAVGAQWFERTVDLHRDLNLASIRSVFKNQCRAFFERAET 555
SL + ++ +Q ++N+++R+ + A + R D+ N+ S +F + +
Sbjct: 875 SLVSDTQAKKIQTMENKYIRRIINASRYTRQADIRTKYNIKSFDEIFDKASQRYANSLTD 934
Query: 556 HSNPLI 573
H NPLI
Sbjct: 935 HENPLI 940
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 40.3 bits (90), Expect = 0.002
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = +1
Query: 376 SLFTRSRMHALQRIQNRFVRKAVGAQWFERTVDLHRDLNLASIRSVFKNQCRAFFERAET 555
SL + ++ +Q ++N+++R+ + A + R D+ N+ S +F + +
Sbjct: 875 SLVSDTQAKKIQTMENKYIRRIINASRYTRQADIRTKYNIKSFDEIFDKASQRYANSLTD 934
Query: 556 HSNPLI 573
H NPLI
Sbjct: 935 HENPLI 940
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 40.3 bits (90), Expect = 0.002
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = +1
Query: 376 SLFTRSRMHALQRIQNRFVRKAVGAQWFERTVDLHRDLNLASIRSVFKNQCRAFFERAET 555
SL + ++ +Q ++N+++R+ + A + R D+ N+ S +F + +
Sbjct: 875 SLVSDTQAKKIQTMENKYIRRIINASRYTRQADIRTKYNIKSFDEIFDKASQRYANSLTD 934
Query: 556 HSNPLI 573
H NPLI
Sbjct: 935 HENPLI 940
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = +1
Query: 376 SLFTRSRMHALQRIQNRFVRKAVGAQWFERTVDLHRDLNLASIRSVFKNQCRAFFERAET 555
SL + ++ +Q ++N+++R+ + A + R D+ N+ S F + +
Sbjct: 428 SLVSDTQAKKIQTMENKYIRRIINASRYTRQADIRTKYNIKSFDETFDKASQRYANSLTD 487
Query: 556 HSNPLI 573
H NPLI
Sbjct: 488 HENPLI 493
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p protein.
Length = 906
Score = 38.3 bits (85), Expect = 0.008
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +1
Query: 370 VHSLFTRSRMHALQRIQNRFVRKAVGAQWFERTVDLHRDLNLASIRSVFKNQCRAFFERA 549
+ + +S + +Q +QNR +R ++ R LHRDLNL ++ + +R
Sbjct: 815 IWGIAAKSNYNRIQVLQNRAMRAITDCPYYVRGTTLHRDLNLHTVEEQISRHTSRYSDRL 874
Query: 550 ETHSNPLIVRAVSYLP 597
H + L R + P
Sbjct: 875 RRHHSILARRLLPARP 890
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 37.9 bits (84), Expect = 0.010
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +1
Query: 385 TRSRMHALQRIQNRFVRKAVGAQWFERTVDLHRDLNLASI 504
+ S + +QR Q++ +R GA W+ R+ ++ RDLN+ S+
Sbjct: 807 SNSNIDIIQRAQSKILRTITGAPWYVRSENIQRDLNIPSV 846
>M55533-1|AAA28305.1| 564|Drosophila melanogaster 5HT-dro serotonin
receptor protein.
Length = 564
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 479 TGISTLPPLGPFSRTSVALSSNAQRHTRTPSSCEPSRTC 595
TG + P P T +A S N QRH+ ++ TC
Sbjct: 370 TGSPSAPQAPPLGHTELASSGNGQRHSSVGNTSLTYSTC 408
>AY118491-1|AAM49860.1| 564|Drosophila melanogaster LD04507p
protein.
Length = 564
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 479 TGISTLPPLGPFSRTSVALSSNAQRHTRTPSSCEPSRTC 595
TG + P P T +A S N QRH+ ++ TC
Sbjct: 370 TGSPSAPQAPPLGHTELASSGNGQRHSSVGNTSLTYSTC 408
>AE014297-4690|AAF57104.1| 564|Drosophila melanogaster CG12073-PA
protein.
Length = 564
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 479 TGISTLPPLGPFSRTSVALSSNAQRHTRTPSSCEPSRTC 595
TG + P P T +A S N QRH+ ++ TC
Sbjct: 370 TGSPSAPQAPPLGHTELASSGNGQRHSSVGNTSLTYSTC 408
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,655,357
Number of Sequences: 53049
Number of extensions: 545798
Number of successful extensions: 1395
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2420893683
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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