Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_I21
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.11c |meu23|B13958-2|DUF1773 family protein 2|Schizosacch...    30   0.13 
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    28   0.51 
SPBC1685.03 |sec11||signal peptidase subunit Sec11 |Schizosaccha...    27   0.90 
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    26   2.7  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   3.6  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    25   6.3  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    25   6.3  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    24   8.4  

>SPCC613.11c |meu23|B13958-2|DUF1773 family protein
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 30.3 bits (65), Expect = 0.13
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -2

Query: 309 SPKQLDRF*RDCCSR*LKLLRVTFNFRKQLGF--RLKKLIKISIKFDSIHSFTG 154
           S + +DR  R  CSR L+   VTF+  + +G   +L   + +S ++D  + F+G
Sbjct: 198 SVQDVDRLSRSQCSRYLQGYGVTFHVNETIGMKKKLASAVGLSAEYDREYPFSG 251


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 28.3 bits (60), Expect = 0.51
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 245 TRSNFSYLLQQSRQNRSSCFGDYPIQIQNKFKNCIFGIGTEIHTY 379
           T SN S LL QSR +  S F     +  + FKN +  + T++ TY
Sbjct: 231 TLSNISDLLSQSRPDNLSPFSHLSNESSDFFKN-VKNVLTDVETY 274


>SPBC1685.03 |sec11||signal peptidase subunit Sec11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 27.5 bits (58), Expect = 0.90
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 201 VFLSGTLIAFEN*KLPGVTSAIYYNSPVKIGPAV 302
           +FL     +F+  K+P V   I Y SPV IG  V
Sbjct: 58  LFLDNRNPSFDEAKVPSVFEKIIYGSPVGIGDIV 91


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 8   DLITSCVSAAAPVFRILMYIFL*GTSNYFPQKKLVLR 118
           D+IT C++A      + +     GTSN FP   +V++
Sbjct: 322 DMITECLNAVRKYGHVSIIADYVGTSNQFPIGHVVMK 358


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 376 CMYFGTYTKNTIFKFILYLYWVITET 299
           C+ FG    + +F+ IL  +WVI ++
Sbjct: 862 CLKFGAPMNDFVFEAILNQFWVIAQS 887


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 203 FFKRNPNCFRKLKVTRSNFSYLLQQSRQNRSSCFGDYPIQ 322
           +F R P       ++ +NF   L +++ N+SS FG   +Q
Sbjct: 202 YFSRPPPTPNVAGLSLNNFFCPLPENKDNKSSPFGSATVQ 241


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = -3

Query: 332 YFVSVLGNHRNSWTDFDGTVVV 267
           +  S  G H++ W+DF+  +++
Sbjct: 103 FLASYTGRHKDVWSDFESNLMI 124


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 170 YTVLRASAIIYERYFHFILVLIFFE 96
           +T+L+ SA+     +HF+L LIF E
Sbjct: 306 FTILQ-SALYLTSSYHFVLFLIFVE 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,731,837
Number of Sequences: 5004
Number of extensions: 34350
Number of successful extensions: 78
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)