Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_I21
         (421 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41746-5|AAT81186.1|  492|Caenorhabditis elegans Innexin protein...    27   7.2  
U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein...    27   7.2  
U41272-7|AAY86277.1|  240|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>U41746-5|AAT81186.1|  492|Caenorhabditis elegans Innexin protein
           10, isoform b protein.
          Length = 492

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -1

Query: 421 LKCLLVMKLFFTK*ICMYFGTYTKNTIFKFILYLYWVI 308
           ++C+LV+ +F  K   + +  Y    +F F  + YW++
Sbjct: 270 IQCVLVINIFNEKIFILLWFWYLALLVFTFGSFFYWLL 307


>U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein
           10, isoform a protein.
          Length = 559

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -1

Query: 421 LKCLLVMKLFFTK*ICMYFGTYTKNTIFKFILYLYWVI 308
           ++C+LV+ +F  K   + +  Y    +F F  + YW++
Sbjct: 270 IQCVLVINIFNEKIFILLWFWYLALLVFTFGSFFYWLL 307


>U41272-7|AAY86277.1|  240|Caenorhabditis elegans Hypothetical
           protein T03G11.9 protein.
          Length = 240

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -1

Query: 409 LVMKLFFTK*ICMYFGTYTKN 347
           LV+ LF T  ICM+FG YT N
Sbjct: 107 LVVCLFST--ICMFFGVYTVN 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,366,970
Number of Sequences: 27780
Number of extensions: 184661
Number of successful extensions: 421
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)