Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_I20
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    33   0.039
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    29   0.63 
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    26   3.4  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    26   4.4  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.9  
SPBC2D10.07c |||mitochondrial inner membrane peptidase complex c...    25   7.7  
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    25   7.7  

>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 32.7 bits (71), Expect = 0.039
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = +3

Query: 384 STLNIGSRCRNLDAICPKSSTSIGSGKTIQGNSYGQVTGKTPEYSIGFCDDVIM 545
           S + +GSR    D     SSTS G+  +      G  TG  PE  IG C   I+
Sbjct: 355 SVIGVGSRVVLADTFEDYSSTSSGNPPSSMEKVSGSFTGTKPEQIIGICRATIL 408


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 164 DWESSEGVPISAILLGGRRPAGV 232
           DWE++  +P+S +L GG  P  V
Sbjct: 698 DWEAASFIPVSYVLAGGLTPKNV 720


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 433 GHIASRLRHREPMFKVLAKVVSKEWTHGKW 344
           G+IASR    EPM  VL   +S  W +  W
Sbjct: 536 GNIASRPVSEEPMIVVLNFGISPTWIYFYW 565


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +3

Query: 291 DQRQLRPLNTVVKLLCTIHLPCVHSLDTT 377
           ++++L+ ++T    +C +HL   H+L+ T
Sbjct: 688 EKKELKDISTSFAFICVLHLANEHNLELT 716


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 24/108 (22%), Positives = 42/108 (38%)
 Frame = +2

Query: 104 AAHPNSRFCTPADQCPIIDSDWESSEGVPISAILLGGRRPAGVPLVVESRDWQHGVFMGA 283
           AAHP+     P D      S  +SS+ +P+++       P   P  +ES+   H     +
Sbjct: 285 AAHPDGNNALPMDNTHANISYMQSSQSMPVNSYSYDRYTP-NQPSYLESKPGNHQPSYTS 343

Query: 284 TMRSEATAAAEHSGKVVMHDPFAMRPFFGYNFGEYLKHWLSMPQPGRN 427
                +TA+       + + P A+      ++  +  H L  P P  N
Sbjct: 344 EQPMYSTASVPQQ---ISNGPTAVNGLPMNSYTPHSNH-LHSPSPNSN 387


>SPBC2D10.07c |||mitochondrial inner membrane peptidase complex
           catalytic subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 400 PMFKVLAKVVSKEWTHGKWI 341
           PM  + AKV+++ W H  W+
Sbjct: 128 PMGLIKAKVIARVWPHPHWM 147


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 373 VSKEWTHGKWIVHNNFTTVFSGRSCL 296
           ++ +WT  KW  H N    F GRSCL
Sbjct: 183 LNPKWT--KWF-HRNLFPCFFGRSCL 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,831
Number of Sequences: 5004
Number of extensions: 65440
Number of successful extensions: 209
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)