Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_I18
         (485 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   285   2e-79
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   285   2e-79
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   7.0  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  285 bits (699), Expect = 2e-79
 Identities = 131/160 (81%), Positives = 140/160 (87%)
 Frame = +3

Query: 6   RDKYKQVFLGGVDKNTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGNGDGQ 185
           +DKYKQVFLGGVDKNTQF RYF            TSLCFVYPLDFARTRLAADVG   G+
Sbjct: 94  KDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGE 153

Query: 186 REFTGLGNCISKIFKSDGLTGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKNTPIV 365
           REFTGLGNC++KIFK+DG+TGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPK TP +
Sbjct: 154 REFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFL 213

Query: 366 ISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILY 485
           ISW IAQ VTTVAGI+SYPFDTVRRRMMMQSGRAKS+ILY
Sbjct: 214 ISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILY 253



 Score = 27.5 bits (58), Expect = 0.080
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +3

Query: 126 YPLDFARTRLAADVGNGDGQREFTGLGNCISKIFKSDGLTGLYRG 260
           YP D  R R+    G    +  +    +C + I+K++G    ++G
Sbjct: 231 YPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275



 Score = 26.6 bits (56), Expect = 0.14
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
 Frame = +3

Query: 183 QREFTGLGNCISKIFKSDGLTGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD--PKNT 356
           ++ + G+ +C  +I K  G    +RG   +V      +A  F F D  + +      KNT
Sbjct: 50  EQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNT 109

Query: 357 PIVISWAIAQTVTTVAGIIS----YPFDTVRRRMMMQSGRA 467
             +  +         AG  S    YP D  R R+    G+A
Sbjct: 110 QFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKA 150


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  285 bits (699), Expect = 2e-79
 Identities = 131/160 (81%), Positives = 140/160 (87%)
 Frame = +3

Query: 6   RDKYKQVFLGGVDKNTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGNGDGQ 185
           +DKYKQVFLGGVDKNTQF RYF            TSLCFVYPLDFARTRLAADVG   G+
Sbjct: 94  KDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGE 153

Query: 186 REFTGLGNCISKIFKSDGLTGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKNTPIV 365
           REFTGLGNC++KIFK+DG+TGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPK TP +
Sbjct: 154 REFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFL 213

Query: 366 ISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILY 485
           ISW IAQ VTTVAGI+SYPFDTVRRRMMMQSGRAKS+ILY
Sbjct: 214 ISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILY 253



 Score = 27.5 bits (58), Expect = 0.080
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +3

Query: 126 YPLDFARTRLAADVGNGDGQREFTGLGNCISKIFKSDGLTGLYRG 260
           YP D  R R+    G    +  +    +C + I+K++G    ++G
Sbjct: 231 YPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275



 Score = 26.6 bits (56), Expect = 0.14
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
 Frame = +3

Query: 183 QREFTGLGNCISKIFKSDGLTGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD--PKNT 356
           ++ + G+ +C  +I K  G    +RG   +V      +A  F F D  + +      KNT
Sbjct: 50  EQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNT 109

Query: 357 PIVISWAIAQTVTTVAGIIS----YPFDTVRRRMMMQSGRA 467
             +  +         AG  S    YP D  R R+    G+A
Sbjct: 110 QFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKA 150


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 356 PHRHQLGHRANRHHSRRYH 412
           PH H +GH  +  H+  +H
Sbjct: 414 PHHHTMGHGHSHIHATPHH 432


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 127 TRSTSPVHVSPPMLAMVMG 183
           T+ TSP HVS    A+ +G
Sbjct: 257 TKPTSPYHVSDHKAAITVG 275


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 227 EDLADAVTETGELALPITIANIGGETC 147
           E + D V   GE+A  ++  +  GE C
Sbjct: 498 EGIVDIVMANGEVATSLSDGSYFGEIC 524


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 227 EDLADAVTETGELALPITIANIGGETC 147
           E + D V   GE+A  ++  +  GE C
Sbjct: 466 EGIVDIVMANGEVATSLSDGSYFGEIC 492


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +2

Query: 350 EHPHRHQ 370
           EHPH+HQ
Sbjct: 19  EHPHQHQ 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,146
Number of Sequences: 438
Number of extensions: 2948
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)