Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_I15
         (581 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   2.9  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   2.9  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    21   6.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   6.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   6.7  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.9  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   8.9  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 580 LITTPNKNYTNCGTDFGKSIPFYFVIN*VQV 488
           +I++ N NY N   ++     +Y +IN  Q+
Sbjct: 303 IISSNNYNYKNYNNNYNSKKLYYNIINIEQI 333


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 580 LITTPNKNYTNCGTDFGKSIPFYFVIN*VQV 488
           +I++ N NY N   ++     +Y +IN  Q+
Sbjct: 314 IISSNNYNYKNYNNNYNSKKLYYNIINIEQI 344


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 126 LWLNSAREQIKSEHPGLKV 182
           +W  + R + K ++PGL V
Sbjct: 54  IWFQNRRTKWKKQNPGLDV 72


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 12/61 (19%), Positives = 25/61 (40%)
 Frame = +3

Query: 24  VWLCTSSKIISKFFAIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKG 203
           +    +S ++     +   ++  D+   P    ML+L      ++   PG K+T+    G
Sbjct: 332 IMFMVASSVVLTVLVLNFHHRTPDRYVMPSWIKMLFLQWLPCLLRMSRPGKKITKKTILG 391

Query: 204 G 206
           G
Sbjct: 392 G 392


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 12/61 (19%), Positives = 25/61 (40%)
 Frame = +3

Query: 24  VWLCTSSKIISKFFAIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKG 203
           +    +S ++     +   ++  D+   P    ML+L      ++   PG K+T+    G
Sbjct: 332 IMFMVASSVVLTVLVLNFHHRTPDRYVMPSWIKMLFLQWLPCLLRMSRPGKKITKKTILG 391

Query: 204 G 206
           G
Sbjct: 392 G 392


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 568 PNKNYTNCGTDF 533
           P  N T CGTD+
Sbjct: 195 PEGNMTACGTDY 206


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 201 GGEMWKSMKDK 233
           GGE+W  ++DK
Sbjct: 450 GGELWTVLRDK 460


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 568 PNKNYTNCGTDF 533
           P  N T CGTD+
Sbjct: 71  PEGNMTACGTDY 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,656
Number of Sequences: 438
Number of extensions: 2665
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)