Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_I14
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa...   125   2e-30
SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe...    25   2.8  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    25   2.8  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    24   8.6  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    24   8.6  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    24   8.6  

>SPCC18B5.06 |erf1|sup45|translation release factor
           eRF1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score =  125 bits (302), Expect = 2e-30
 Identities = 61/118 (51%), Positives = 79/118 (66%)
 Frame = +2

Query: 17  STGSSTSNRVRTTLTIRVENIDFDTQACVLRLKGRNIVENQYVKMGAYHTLDLELNRKFI 196
           +TGS++ +RV   L I VEN+DFDT+A  L +KGR    +  VKMG+YHTLDLEL+R F 
Sbjct: 52  ATGSTSGSRVVMKLRILVENMDFDTKAAQLHIKGRTTEYHPEVKMGSYHTLDLELHRNFT 111

Query: 197 LQKVLWDSVALERVDTACDPXXXXXXXXXXMQEGLAHVCLITPSMTLVRSTIDITIPR 370
           L K  WD+ AL+RVD AC+P          + EGLA++CLIT  MT++R  ID  IPR
Sbjct: 112 LYKNEWDAFALDRVDAACNPSRNAEIGAVVLDEGLANICLITDYMTILRQRIDQVIPR 169


>SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 187 KIYITKSVMGLCSFRKG 237
           KI+I KS +G CS R G
Sbjct: 15  KIFIQKSFLGFCSLRVG 31


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 198 NINFLFNSRSNVWYAPIF--TY*FSTILRPFNRNTH 97
           N  F F SR ++W AP++  +Y  + +L  F+ N +
Sbjct: 117 NTQFQFTSRKDLWDAPLYSPSYNNTNLLYNFSYNAN 152


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 192 NFLFNSRSNVWYAPIFTY*FSTIL 121
           NF  +S+SN W A I +Y  S +L
Sbjct: 517 NFYQDSKSNHWEAQIVSYHISGLL 540


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 23  GSSTSNRVRTTLTIRVENIDFDTQA 97
           GSSTS +  +    R EN DFD Q+
Sbjct: 283 GSSTSLKRSSMYLARKENQDFDDQS 307


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +2

Query: 14  SSTGSSTSNRVRTT---LTIRVENIDFDTQACVLRLKGRNIVENQYVKMGAYHTLDLELN 184
           S +     +R+ +T   L+I     DF+T +    L  +N VE     M   + L   + 
Sbjct: 269 SISDPEVKDRIESTDLLLSIGALKSDFNTGSFSYHLSQKNAVEFHSDHMRIRYALYPNVA 328

Query: 185 RKFILQKVL 211
            K+IL+K+L
Sbjct: 329 MKYILRKLL 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,379,480
Number of Sequences: 5004
Number of extensions: 23432
Number of successful extensions: 55
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)