Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_I14
         (370 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36238-5|CAA85277.1|  381|Caenorhabditis elegans Hypothetical pr...   151   2e-37
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    27   5.5  
U80447-8|AAB37812.3|  900|Caenorhabditis elegans Patched related...    26   7.3  
U41510-2|ABP49526.1|  189|Caenorhabditis elegans Hypothetical pr...    26   7.3  
AF067949-2|AAC19235.1|  357|Caenorhabditis elegans Hypothetical ...    26   9.7  

>Z36238-5|CAA85277.1|  381|Caenorhabditis elegans Hypothetical
           protein R74.6 protein.
          Length = 381

 Score =  151 bits (365), Expect = 2e-37
 Identities = 72/121 (59%), Positives = 89/121 (73%)
 Frame = +2

Query: 8   AESSTGSSTSNRVRTTLTIRVENIDFDTQACVLRLKGRNIVENQYVKMGAYHTLDLELNR 187
           +E+STG+++S RV T LT+ VE+IDFD  A  L LKGRNI EN  VK+GAYHT+DLE NR
Sbjct: 49  SETSTGTTSSQRVHTMLTVSVESIDFDPGAQELHLKGRNIEENDIVKLGAYHTIDLEPNR 108

Query: 188 KFILQKVLWDSVALERVDTACDPXXXXXXXXXXMQEGLAHVCLITPSMTLVRSTIDITIP 367
           KF LQK  WDS+ LER++ A DP          + EGLA+VCLITP+MTL R+ ID+TIP
Sbjct: 109 KFTLQKTEWDSIDLERLNLALDPAQAADVAAVVLHEGLANVCLITPAMTLTRAKIDMTIP 168

Query: 368 R 370
           R
Sbjct: 169 R 169


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +1

Query: 88  HAGMCIAIERSQYCRKSVCKDGSI---PHIRSGIE*KI 192
           + G C   E +Q C  SVC  G     P +RS  + +I
Sbjct: 398 YGGNCTGYEGTQICYNSVCSQGKCVVPPRVRSATKSRI 435


>U80447-8|AAB37812.3|  900|Caenorhabditis elegans Patched related
           family protein 10 protein.
          Length = 900

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 243 VSTLSKATESHNTFCNINFLFNSRSNVWYAPIFTY 139
           +ST +K TE+ NTF  I   F   +   Y P++ +
Sbjct: 682 ISTTTKQTEATNTFREIASRFEQYNVTTYMPLWLF 716


>U41510-2|ABP49526.1|  189|Caenorhabditis elegans Hypothetical
           protein ZC449.7 protein.
          Length = 189

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 14/58 (24%), Positives = 31/58 (53%)
 Frame = +2

Query: 29  STSNRVRTTLTIRVENIDFDTQACVLRLKGRNIVENQYVKMGAYHTLDLELNRKFILQ 202
           +TS   +T LTI +  I++D  AC  +   + ++ ++  ++ A   L+ E+  ++  Q
Sbjct: 29  TTSTNFQTPLTITIPPIEYDIPAC--QFNQQPLLTSKSPELDALVKLNKEIGNQYTYQ 84


>AF067949-2|AAC19235.1|  357|Caenorhabditis elegans Hypothetical
           protein T10H9.1 protein.
          Length = 357

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -1

Query: 151 HLYILIFYNIATFQSQYTCLRVKINIFYSNSERSP 47
           HLY+   + +  F + +  +   +N+FY N+   P
Sbjct: 55  HLYLFYAFAVTNFFTGFFTIPTYLNLFYRNNLNCP 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,753,226
Number of Sequences: 27780
Number of extensions: 136219
Number of successful extensions: 331
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)