Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_I14
         (370 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   3.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   8.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    20   8.1  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +2

Query: 35  SNRVRTTLT--IRVENIDFDTQACVL 106
           + R++ TL   +R+E   FD Q C L
Sbjct: 133 NTRLQATLNCGLRLEKFPFDVQECPL 158


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 44  VRTTLTIRVENIDFDTQACVLR 109
           ++    + +EN   DTQ C L+
Sbjct: 126 IKAGCPMNLENFPMDTQRCPLQ 147


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = +2

Query: 68  VENIDFDTQACVLRLKGRNIVENQYVKMGAYHTL 169
           ++N D   +   + + G   V+   +K G YH L
Sbjct: 592 LQNFDIKDKNKKVNVAGCRCVKGILLKSGLYHVL 625


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,438
Number of Sequences: 438
Number of extensions: 1729
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)