Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_I12
         (413 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0486 + 18012886-18012997,18013098-18013374,18013510-18013516     29   1.1  
01_06_1397 - 37017468-37017561,37017763-37017836,37019128-370191...    29   1.9  
09_04_0485 + 18003682-18003790,18003892-18004168,18004323-18004329     28   3.4  
04_04_1013 + 30109321-30110790                                         28   3.4  
04_04_1006 + 30048618-30050087                                         28   3.4  

>09_04_0486 + 18012886-18012997,18013098-18013374,18013510-18013516
          Length = 131

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 113 GTHLLVLGDRFWNLGAVAGQAVIPLCYG 30
           GT +    D FWN GA  GQ  +  C G
Sbjct: 48  GTMIAAASDVFWNGGAACGQQYVVTCTG 75


>01_06_1397 -
           37017468-37017561,37017763-37017836,37019128-37019193,
           37019543-37019623,37019735-37019943,37020096-37020192,
           37020497-37020514,37020597-37020727,37021040-37021088,
           37021450-37021539,37021616-37021721,37021815-37021885,
           37021963-37022037,37022059-37022120,37022677-37022887,
           37023599-37024069,37024387-37024719
          Length = 745

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 43  GMTAWPATAPRFQNLSPSTNRCVPVALL 126
           G   +P+   R  +LSP++ RC P+A+L
Sbjct: 49  GSLPFPSNEIRISHLSPTSERCPPLAIL 76


>09_04_0485 + 18003682-18003790,18003892-18004168,18004323-18004329
          Length = 130

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 113 GTHLLVLGDRFWNLGAVAGQAVIPLCYG 30
           GT +    D FWN GA  G+  +  C G
Sbjct: 47  GTMIAAASDVFWNGGAACGKRYVVTCTG 74


>04_04_1013 + 30109321-30110790
          Length = 489

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 45  TTMLWLPHDIFYP 7
           TT+LWLP  +FYP
Sbjct: 370 TTLLWLPGSVFYP 382


>04_04_1006 + 30048618-30050087
          Length = 489

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 45  TTMLWLPHDIFYP 7
           TT+LWLP  +FYP
Sbjct: 370 TTLLWLPGSVFYP 382


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,202,692
Number of Sequences: 37544
Number of extensions: 223431
Number of successful extensions: 403
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)