Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_I12
         (413 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical pr...    29   1.3  
U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium chann...    27   7.1  
U61949-8|AAU05569.1|  332|Caenorhabditis elegans Hypothetical pr...    26   9.4  
U61949-7|AAB03155.1|  510|Caenorhabditis elegans Hypothetical pr...    26   9.4  

>U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical
           protein B0361.8 protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = -3

Query: 69  SGSWPGRHTTMLWLPHD--IFYPSC 1
           +GSW  RH T +W   D  I YP C
Sbjct: 235 NGSWTQRHITSIWSRRDVSIVYPPC 259


>U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 2 protein.
          Length = 675

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 355 YGKLVHWFQTL*IINKQIFPVKIYLLVY 272
           YG+L + F T+ +I+  I P  I LLV+
Sbjct: 157 YGRLYYLFHTVTLIDILIIPATILLLVF 184


>U61949-8|AAU05569.1|  332|Caenorhabditis elegans Hypothetical
           protein F49E8.7b protein.
          Length = 332

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 319 IINKQIFPVKIYLLVYINQYHKLQYIRDRFFYN 221
           II K+I P+K+   V +    ++ YI + FF+N
Sbjct: 214 IILKRIVPLKVGSSVKVQLKKQIDYIVNTFFFN 246


>U61949-7|AAB03155.1|  510|Caenorhabditis elegans Hypothetical
           protein F49E8.7a protein.
          Length = 510

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 319 IINKQIFPVKIYLLVYINQYHKLQYIRDRFFYN 221
           II K+I P+K+   V +    ++ YI + FF+N
Sbjct: 392 IILKRIVPLKVGSSVKVQLKKQIDYIVNTFFFN 424


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,908,725
Number of Sequences: 27780
Number of extensions: 208490
Number of successful extensions: 392
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)