Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_I12
         (413 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   1.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   3.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   3.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   7.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   9.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   9.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   9.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    20   9.6  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 347 IGSLVSDFIDYKQTNLSC*NI-PISIYKSVP 258
           + S   DFID+ Q NL C  +  +S Y   P
Sbjct: 128 LNSESKDFIDFIQKNLQCCGVHSLSDYNDKP 158


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
 Frame = -3

Query: 48  HT-TMLWLPHDIFYPSC 1
           HT  ++WL H IF  SC
Sbjct: 115 HTGEVVWLSHGIFRSSC 131


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +1

Query: 163 PGPHHH 180
           PGPHHH
Sbjct: 412 PGPHHH 417


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 48  DGLASYRSQVPKP 86
           DG+  YRS  P P
Sbjct: 105 DGMGGYRSASPSP 117


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 162 SWTTSSLNNSQD 197
           SW+  SLNN+ D
Sbjct: 464 SWSDESLNNALD 475


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 335  VSDFIDYKQTNLSC*NIPISIYKSVP 258
            VSDFI +  ++ S    P+S  KS+P
Sbjct: 1814 VSDFIYHGTSSTSSDISPMSEQKSLP 1839


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 335  VSDFIDYKQTNLSC*NIPISIYKSVP 258
            VSDFI +  ++ S    P+S  KS+P
Sbjct: 1810 VSDFIYHGTSSTSSDISPMSEQKSLP 1835


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 214 SIHCKKTYHEYTVTYGTDL 270
           S HC+K    Y  ++ TD+
Sbjct: 780 SEHCEKGKEYYAASFHTDI 798


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,835
Number of Sequences: 438
Number of extensions: 2655
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)