Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_I11
(247 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 0.46
SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces pom... 25 1.8
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb... 24 3.2
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s... 23 4.3
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 23 5.6
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy... 23 7.4
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 23 7.4
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 23 7.4
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 23 7.4
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe... 23 7.4
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 23 7.4
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc... 23 7.4
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 23 7.4
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ... 22 9.8
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 22 9.8
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 22 9.8
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 22 9.8
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 22 9.8
>SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 149
Score = 26.6 bits (56), Expect = 0.46
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 160 FGSNCHLQGLVSNRSGISSIWPC 92
F NCH+QG++S R+ + + PC
Sbjct: 26 FEKNCHIQGILSKRA-LYMLIPC 47
>SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 24.6 bits (51), Expect = 1.8
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 145 DNYFQNPDAYYKDPGKT 195
DNY Q D YYK G T
Sbjct: 18 DNYAQGVDVYYKKVGGT 34
>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 23.8 bits (49), Expect = 3.2
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 64 FVAFTQTTESTAIYC-LSQNDWKLDLASDNYFQNPDAYYKDPGKTSVDRKKLEQL 225
FV + TE I +S+ + + SDN A Y GK+SV +++L +L
Sbjct: 469 FVVKDRATELPLILQQISEQNMVAEDISDNELAKTHARYLIGGKSSVSKERLYRL 523
>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 98
Score = 23.4 bits (48), Expect = 4.3
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = +1
Query: 28 KLKSSQRDKVKKFVAFTQTTESTAIYCLSQNDWKLDLASDNYFQNPDAYYKDPGKTSVDR 207
K S++ KVK A Q T + C+ KLD + + QN + D + R
Sbjct: 22 KFIESEQQKVKLQQAIHQFTSTCWPKCIGNIGNKLDKSEEQCLQNCVERFLDCNFHIIKR 81
Query: 208 KKLEQ 222
LE+
Sbjct: 82 YALEK 86
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 23.0 bits (47), Expect = 5.6
Identities = 14/73 (19%), Positives = 30/73 (41%)
Frame = +1
Query: 25 DKLKSSQRDKVKKFVAFTQTTESTAIYCLSQNDWKLDLASDNYFQNPDAYYKDPGKTSVD 204
+K+ S ++ +++ ++ T + L N+WK + DA + +
Sbjct: 887 EKILLSLKEIIREQDKLSRVTLLEYLKQLHANEWKCFVRDTKILAEEDALSNQDLNSQDE 946
Query: 205 RKKLEQLFNRYRD 243
K EQL ++ D
Sbjct: 947 SMKAEQLHKKFDD 959
>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 22.6 bits (46), Expect = 7.4
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +1
Query: 103 YCLSQNDWKLDLASDNYFQNPDAYYKDPGKTSVDRKKLEQL 225
Y + D L+ D+ NP+A+YK+ K+ + R + ++
Sbjct: 42 YPPNAKDINLEDMLDDEEWNPEAFYKNVPKSMLKRSIIHRM 82
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 22.6 bits (46), Expect = 7.4
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 109 LSQNDWKLDLASDNYFQNPDA 171
++ +DW+LDLAS + PD+
Sbjct: 330 IAMHDWRLDLASFD-IHGPDS 349
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 22.6 bits (46), Expect = 7.4
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = -3
Query: 164 GFWK*LSLARSSFQSFWDKQYMAVLSVVCVNATNFFTLSLCDDFNLSSCRIHCS 3
G WK +S++ S K Y AV+S V +T+ TL + D N CRI S
Sbjct: 308 GIWKNISVSIPDINSLSLKDYSAVVSRVI--STD--TLEVRKD-NGVECRIQLS 356
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 22.6 bits (46), Expect = 7.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 34 KSSQRDKVKKFVAFTQTTESTAIYCLSQNDWK 129
KS+ DK++ F+ + + +E NDWK
Sbjct: 1607 KSAPLDKLRGFMKYQRRSEHYRNPLKRTNDWK 1638
>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 325
Score = 22.6 bits (46), Expect = 7.4
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2
Query: 98 PYTAYPRTIG 127
PYT YPR +G
Sbjct: 60 PYTVYPRIVG 69
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 22.6 bits (46), Expect = 7.4
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -3
Query: 68 TNFFTLSLCDDF 33
T+FF +SLCD F
Sbjct: 341 TDFFLVSLCDHF 352
>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 273
Score = 22.6 bits (46), Expect = 7.4
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +1
Query: 19 HEDKLKSSQRDKVKKFVAFTQTTESTAIYCLSQND 123
HE+K + + +F+ F T ++YC S D
Sbjct: 158 HENKSFTLKLANELEFIFFHDTRGKFSVYCSSSKD 192
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 990
Score = 22.6 bits (46), Expect = 7.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 25 DKLKSSQRDKVKKFVAFTQTTEST 96
D LK+ +DKVK+F + EST
Sbjct: 958 DLLKARIKDKVKQFWILCKGLEST 981
>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 22.2 bits (45), Expect = 9.8
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +3
Query: 39 ITERQSEEVRRIHADYREHGHIL 107
I E++ E R++ DY + H+L
Sbjct: 248 IDEKRDEFQERLYNDYSKESHLL 270
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 22.2 bits (45), Expect = 9.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 110 KQYMAVLSVVCVNATNFFTLSLCDDFNLS 24
K+Y +L ++N+FT +DFNL+
Sbjct: 273 KEYWVLLLFPMFFSSNWFTTYQFNDFNLA 301
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 22.2 bits (45), Expect = 9.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 188 VKHRWIERSSSNYLIDIETN 247
+K +I+ SSSN DIE+N
Sbjct: 587 IKSTYIDDSSSNSPSDIESN 606
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 22.2 bits (45), Expect = 9.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 49 DKVKKFVAFTQTTESTAIY 105
D VKKF+ F T TA++
Sbjct: 934 DAVKKFLQFQITVNITAVF 952
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 22.2 bits (45), Expect = 9.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 99 GRALGSLRECDELLHFVSL 43
G +L L E ELL FVS+
Sbjct: 434 GHSLSELTEAQELLGFVSV 452
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 909,938
Number of Sequences: 5004
Number of extensions: 14083
Number of successful extensions: 48
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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