Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_I11
(247 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0903 - 6939672-6939782,6940051-6940110,6940221-6940322,694... 46 4e-06
02_04_0236 - 21170753-21170794,21171089-21172220,21172332-211726... 28 0.91
01_01_0572 - 4244714-4245311,4245694-4245736,4246172-4246283,424... 27 1.6
05_01_0135 + 908803-909059,913133-913187,913499-914047,914140-91... 27 2.1
08_02_0030 + 11380149-11380721,11380800-11381073,11381281-11382449 27 2.8
12_01_1046 - 10756062-10756326,10757618-10757782,10757901-107582... 25 6.4
11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,259... 25 6.4
10_03_0015 - 7079715-7079898,7080107-7080362,7080858-7081740 25 6.4
06_01_0421 - 3000486-3000595,3000909-3001148,3001659-3001722,300... 25 6.4
05_07_0306 - 29108860-29109282,29109425-29110441 25 6.4
12_01_0543 - 4271380-4272218,4272258-4272873 25 8.5
01_06_1528 + 38011391-38011635,38012366-38012566,38012659-380128... 25 8.5
01_06_1293 - 36050847-36051304,36052343-36052826 25 8.5
>06_01_0903 -
6939672-6939782,6940051-6940110,6940221-6940322,
6940464-6940513,6940686-6940750,6940849-6940931,
6941117-6941140,6941798-6941856,6942041-6942174,
6942823-6942884,6942908-6942976
Length = 272
Score = 46.0 bits (104), Expect = 4e-06
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +1
Query: 28 KLKSSQRDKVKKFVAFTQTTESTAIYCLSQNDWKLDLASDNYFQNPDAYYKDPGKTSVDR 207
KL RDKV++F+ T +E A+ L +DW L+ A D +Y P + +
Sbjct: 25 KLGRGSRDKVQQFMTITGASEKVALQALKASDWHLEGAF-------DFFYSQPQISLTNS 77
Query: 208 KKLEQLFNRYRD 243
+ LE L+NRY++
Sbjct: 78 RHLEDLYNRYKE 89
>02_04_0236 -
21170753-21170794,21171089-21172220,21172332-21172601,
21173043-21173305,21173406-21173492,21174149-21174326,
21174784-21174984,21175769-21176025
Length = 809
Score = 28.3 bits (60), Expect = 0.91
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 192 FTRIFVVSVWVLEVIVTCKV*FPIVLG*AVYGRALGSL 79
FT ++ + + V V + P++L A YGR +G+L
Sbjct: 515 FTAVYCLGILTYGVAVPSGLFIPVILAGATYGRIVGTL 552
>01_01_0572 -
4244714-4245311,4245694-4245736,4246172-4246283,
4246462-4246551,4246625-4246787,4246909-4247015,
4247149-4247230,4247314-4247351,4247434-4247542,
4248031-4248095,4248358-4248468,4248610-4248747
Length = 551
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 104 YMAVLSVVCVNATNFFTLSLCDDFNLSSCRIH 9
++A++ V C NF +LSL F ++ C H
Sbjct: 78 HIALIKVFCKKGKNFISLSLSFLFAITDCNSH 109
>05_01_0135 +
908803-909059,913133-913187,913499-914047,914140-914365,
914446-914906
Length = 515
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 79 QTTESTAIYCLSQNDWKLDLASDNYFQNPDAYYK 180
+T T I C + ++W LD D Y + + +Y+
Sbjct: 439 KTQVKTVIACCTLHNWILDNGDDEYVYDHETWYR 472
>08_02_0030 + 11380149-11380721,11380800-11381073,11381281-11382449
Length = 671
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 172 YYKDPGKTSVDRKKLEQLFNR 234
Y+K P K+S KKLEQL R
Sbjct: 619 YWKTPVKSSTPAKKLEQLAQR 639
>12_01_1046 -
10756062-10756326,10757618-10757782,10757901-10758206,
10758279-10758377,10760555-10760670,10760756-10760848,
10760946-10761107,10761784-10762170
Length = 530
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/49 (22%), Positives = 21/49 (42%)
Frame = -3
Query: 167 SGFWK*LSLARSSFQSFWDKQYMAVLSVVCVNATNFFTLSLCDDFNLSS 21
S W +++ + F+ WD + L+ C N L+ C + +S
Sbjct: 274 SSVWWEMNIRKERFEQEWDLAVVNALTASCCNVMVLGLLAPCRSYGSTS 322
>11_01_0346 -
2589111-2589220,2589613-2589852,2589956-2590028,
2590301-2590606,2590698-2590912,2591461-2591755,
2591901-2592065,2592142-2592738,2593029-2593115,
2593203-2593523,2594047-2596071
Length = 1477
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 154 FQNPDAYYKDPGKTSVDRKKLEQLFNRY 237
+QN D Y D ++VD LFN Y
Sbjct: 757 YQNADIYLLDDPFSAVDAHTASSLFNEY 784
>10_03_0015 - 7079715-7079898,7080107-7080362,7080858-7081740
Length = 440
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 172 YYKDPGKTSVDRKKLEQ 222
Y+K P K++V KKLEQ
Sbjct: 422 YWKTPAKSNVPAKKLEQ 438
>06_01_0421 -
3000486-3000595,3000909-3001148,3001659-3001722,
3001969-3002274,3002365-3002579,3003047-3003341,
3003487-3003651,3003745-3004341,3004855-3004941,
3005022-3005342,3006218-3008242
Length = 1474
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 154 FQNPDAYYKDPGKTSVDRKKLEQLFNRY 237
+QN D Y D ++VD LFN Y
Sbjct: 757 YQNADIYLLDDPFSAVDAHTASSLFNEY 784
>05_07_0306 - 29108860-29109282,29109425-29110441
Length = 479
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +1
Query: 52 KVKKFVAFTQTTESTAIYCLSQNDWKLDLASDNYFQNPDAYYKDPGKTSVDRKKLEQLFN 231
++++ + TT + L +ND +D+A + A +PG+T + K Q N
Sbjct: 414 EIEQLIEEVLTTPAEVAEVLMRND-DVDVALQVLAEFLKAKRNEPGETKAENKNGNQKIN 472
Query: 232 RY 237
+Y
Sbjct: 473 KY 474
>12_01_0543 - 4271380-4272218,4272258-4272873
Length = 484
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 172 YYKDPGKTSVDRKKLEQ 222
Y+K P K+S+ KKLEQ
Sbjct: 432 YWKTPVKSSIPAKKLEQ 448
>01_06_1528 +
38011391-38011635,38012366-38012566,38012659-38012836,
38012946-38013208,38013380-38013649,38013753-38014950
Length = 784
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 192 FTRIFVVSVWVLEVIVTCKV*FPIVLG*AVYGRALGSL 79
FT ++ + + V V + P++L A +GR LG L
Sbjct: 484 FTAVYSLGLVTYGVAVPSGLFIPVILSGASFGRLLGKL 521
>01_06_1293 - 36050847-36051304,36052343-36052826
Length = 313
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +3
Query: 54 SEEVRRIHADYREHGHI 104
+E++++I A REHGHI
Sbjct: 68 AEQIQQITARLREHGHI 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,676,422
Number of Sequences: 37544
Number of extensions: 84397
Number of successful extensions: 271
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -