Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_I11
(247 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL024499-1|CAB54261.2| 295|Caenorhabditis elegans Hypothetical ... 66 2e-12
AC006792-1|AAF60741.2| 642|Caenorhabditis elegans Hypothetical ... 33 0.020
AL032640-3|CAA21641.2| 424|Caenorhabditis elegans Hypothetical ... 29 0.44
Z50741-6|CAA90613.3| 331|Caenorhabditis elegans Hypothetical pr... 27 1.8
U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protei... 27 1.8
AL032630-15|CAA21571.3| 331|Caenorhabditis elegans Hypothetical... 27 1.8
U40797-1|AAB37554.2| 250|Caenorhabditis elegans Hypothetical pr... 27 2.3
U23520-3|AAC46555.2| 470|Caenorhabditis elegans Hypothetical pr... 26 3.1
U23520-2|AAR25655.1| 485|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z50874-10|CAA90770.1| 302|Caenorhabditis elegans Hypothetical p... 25 5.4
AL117204-7|CAB55121.3| 173|Caenorhabditis elegans Hypothetical ... 25 5.4
U28738-2|AAA68309.4| 982|Caenorhabditis elegans Hypothetical pr... 25 7.1
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ... 25 7.1
Z99102-1|CAB11776.1| 523|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z68217-3|CAA92466.2| 466|Caenorhabditis elegans Hypothetical pr... 25 9.4
U58084-1|AAC47121.1| 743|Caenorhabditis elegans CUL-2 protein. 25 9.4
AL117204-6|CAB55149.2| 833|Caenorhabditis elegans Hypothetical ... 25 9.4
>AL024499-1|CAB54261.2| 295|Caenorhabditis elegans Hypothetical
protein H38K22.2a protein.
Length = 295
Score = 66.5 bits (155), Expect = 2e-12
Identities = 28/73 (38%), Positives = 49/73 (67%)
Frame = +1
Query: 25 DKLKSSQRDKVKKFVAFTQTTESTAIYCLSQNDWKLDLASDNYFQNPDAYYKDPGKTSVD 204
++LKS Q+ K+++FV +TQ TE+ ++ L++ +W ++ A YF NP+ + + SVD
Sbjct: 2 NRLKSDQKTKLRQFVQWTQVTEAVSLNFLAKANWNIEYAMTLYFDNPNLFAGSTPQPSVD 61
Query: 205 RKKLEQLFNRYRD 243
R +E+LFN+Y D
Sbjct: 62 RSNIERLFNQYVD 74
>AC006792-1|AAF60741.2| 642|Caenorhabditis elegans Hypothetical
protein Y50C1A.1 protein.
Length = 642
Score = 33.5 bits (73), Expect = 0.020
Identities = 21/74 (28%), Positives = 37/74 (50%)
Frame = +1
Query: 19 HEDKLKSSQRDKVKKFVAFTQTTESTAIYCLSQNDWKLDLASDNYFQNPDAYYKDPGKTS 198
+ D L +++ KVK+ ++ AI L +NDW + ++S + D PG TS
Sbjct: 2 YPDGLTENEKLKVKELCTMVNISDEDAIKLLKENDWDIAISSRRVSKQEDKTLV-PG-TS 59
Query: 199 VDRKKLEQLFNRYR 240
+ L++L +R R
Sbjct: 60 REEIDLDRLSSRLR 73
>AL032640-3|CAA21641.2| 424|Caenorhabditis elegans Hypothetical
protein Y43F8A.3 protein.
Length = 424
Score = 29.1 bits (62), Expect = 0.44
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 31 LKSSQRDKVKKFVAFTQTTESTAIYCLSQNDWKLDLASDNYFQN-PDAYYKDPGKTSVDR 207
+K R+K+ K + + T EST Y ++ + ++ ++ QN + DP + + R
Sbjct: 291 VKPDYREKIDKLLTYRTTIESTHTYNTTKIPKRWEIVENSEAQNLLEKVIFDPNFSPIMR 350
Query: 208 KKLEQL 225
+ LE L
Sbjct: 351 ENLENL 356
>Z50741-6|CAA90613.3| 331|Caenorhabditis elegans Hypothetical
protein Y62H9A.14 protein.
Length = 331
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 139 ASDNYFQNPDAYYKDPGKTSVDRKKLEQLFNRYRD 243
+ +NY +NP Y D T +D+K L + + + D
Sbjct: 160 SKENYEKNPSLYQYDLLSTGLDKKNLRKPCDSFED 194
>U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protein
111 protein.
Length = 332
Score = 27.1 bits (57), Expect = 1.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 95 VLSVVCVNATNFFTLSLCDDFN 30
++SV C++ FF S+C+D N
Sbjct: 15 LVSVACISFCAFFAASVCEDIN 36
>AL032630-15|CAA21571.3| 331|Caenorhabditis elegans Hypothetical
protein Y62H9A.14 protein.
Length = 331
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 139 ASDNYFQNPDAYYKDPGKTSVDRKKLEQLFNRYRD 243
+ +NY +NP Y D T +D+K L + + + D
Sbjct: 160 SKENYEKNPSLYQYDLLSTGLDKKNLRKPCDSFED 194
>U40797-1|AAB37554.2| 250|Caenorhabditis elegans Hypothetical
protein C28C12.11 protein.
Length = 250
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 131 SFQSFWDKQYMAVL-SVVCVNATNFFTLSLCD 39
S SFWD Y+ +L ++ CV + L +C+
Sbjct: 85 SHYSFWDSMYLILLPALTCVFLIFYTVLEICE 116
>U23520-3|AAC46555.2| 470|Caenorhabditis elegans Hypothetical
protein C35B8.3a protein.
Length = 470
Score = 26.2 bits (55), Expect = 3.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 106 CLSQNDWKLDLASDNYFQNPDAYYKDPGKTSVDRKKLEQLFNRY 237
C+S N+ L + +PD Y K P + + K L Q+FN Y
Sbjct: 18 CISSNEVAQALRPFLFLVHPDKYAKFPEIQTQNEKSL-QIFNGY 60
>U23520-2|AAR25655.1| 485|Caenorhabditis elegans Hypothetical
protein C35B8.3b protein.
Length = 485
Score = 26.2 bits (55), Expect = 3.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 106 CLSQNDWKLDLASDNYFQNPDAYYKDPGKTSVDRKKLEQLFNRY 237
C+S N+ L + +PD Y K P + + K L Q+FN Y
Sbjct: 33 CISSNEVAQALRPFLFLVHPDKYAKFPEIQTQNEKSL-QIFNGY 75
>Z50874-10|CAA90770.1| 302|Caenorhabditis elegans Hypothetical
protein R10E4.11 protein.
Length = 302
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 202 PPMFYQDLCSKRLGFGSNCH 143
PP Y C KRL S+CH
Sbjct: 146 PPKMYACSCGKRLKTHSDCH 165
>AL117204-7|CAB55121.3| 173|Caenorhabditis elegans Hypothetical
protein Y116A8C.15 protein.
Length = 173
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 13 IRHEDKLKSSQRDKVKKFVAFTQTTESTAI 102
+RH S + D+V KFV Q+ ES A+
Sbjct: 65 LRHIKNRYSLKEDEVNKFVVRNQSVESGAV 94
>U28738-2|AAA68309.4| 982|Caenorhabditis elegans Hypothetical
protein T28D9.7 protein.
Length = 982
Score = 25.0 bits (52), Expect = 7.1
Identities = 8/25 (32%), Positives = 18/25 (72%)
Frame = +1
Query: 94 TAIYCLSQNDWKLDLASDNYFQNPD 168
T ++C+ +ND +++ ++D F NP+
Sbjct: 323 TGVHCIEENDEQIEASTD--FNNPE 345
>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
protein M01E10.2 protein.
Length = 1286
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 51 QSEEVRRIHADYREHGHILLIPERLET 131
+SEE++ HA++ E+G I IP R T
Sbjct: 438 ESEEIQ--HAEHAENGQISAIPTRKPT 462
>Z99102-1|CAB11776.1| 523|Caenorhabditis elegans Hypothetical
protein B0331.2 protein.
Length = 523
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = -3
Query: 101 MAVLSVVCVNATNFFTLSLCDDFNLSSCRIHCS 3
M+ +S C+ FT+ +C F + HC+
Sbjct: 440 MSPISGFCIEVGTAFTVLICVKFGIPISSTHCT 472
>Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical
protein ZK520.4d protein.
Length = 743
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 49 DKVKKFVAFTQTTESTAIYCLSQNDWKLDL 138
D ++ AF Q + I CL+ WK DL
Sbjct: 124 DNFAQYAAFLQIPDVKEIGCLALEIWKEDL 153
>Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical
protein ZK520.4c protein.
Length = 791
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 49 DKVKKFVAFTQTTESTAIYCLSQNDWKLDL 138
D ++ AF Q + I CL+ WK DL
Sbjct: 141 DNFAQYAAFLQIPDVKEIGCLALEIWKEDL 170
>Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical
protein ZK520.4b protein.
Length = 774
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 49 DKVKKFVAFTQTTESTAIYCLSQNDWKLDL 138
D ++ AF Q + I CL+ WK DL
Sbjct: 124 DNFAQYAAFLQIPDVKEIGCLALEIWKEDL 153
>Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical
protein ZK520.4a protein.
Length = 850
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 49 DKVKKFVAFTQTTESTAIYCLSQNDWKLDL 138
D ++ AF Q + I CL+ WK DL
Sbjct: 200 DNFAQYAAFLQIPDVKEIGCLALEIWKEDL 229
>Z68217-3|CAA92466.2| 466|Caenorhabditis elegans Hypothetical
protein F58G6.4 protein.
Length = 466
Score = 24.6 bits (51), Expect = 9.4
Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Frame = +1
Query: 88 ESTAIYCLSQNDWKLDLASDNYFQNPDAYYKD--PGKTSV--DRKKLEQLF 228
E T++ L+Q D+++DL + ++++P Y+D P K ++ D K L++L+
Sbjct: 65 EVTSVSELTQ-DFEIDLYINEFWEDPALVYEDMNPCKRNISFDDKVLQRLW 114
>U58084-1|AAC47121.1| 743|Caenorhabditis elegans CUL-2 protein.
Length = 743
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 49 DKVKKFVAFTQTTESTAIYCLSQNDWKLDL 138
D ++ AF Q + I CL+ WK DL
Sbjct: 124 DNFAQYAAFLQIPDVKEIGCLALEIWKEDL 153
>AL117204-6|CAB55149.2| 833|Caenorhabditis elegans Hypothetical
protein Y116A8C.13 protein.
Length = 833
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +1
Query: 187 GKTSV-DRKKLEQLFNRYRD 243
GKT V DR+KL + FN +RD
Sbjct: 565 GKTQVPDRQKLVRTFNDHRD 584
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,993,210
Number of Sequences: 27780
Number of extensions: 78417
Number of successful extensions: 307
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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