Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_I11
         (247 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   0.32 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   0.42 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   0.97 
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   1.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    19   6.9  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.8 bits (49), Expect = 0.32
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 172 YYKDPGKTSVDRKKLEQLFNRYRDQ 246
           Y++   K    RK++EQ+  R R+Q
Sbjct: 55  YHRQHSKNEQQRKEMEQMREREREQ 79


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.4 bits (48), Expect = 0.42
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 105 VYGRALGSLRECDELLHFVSL 43
           + G ALG +R  D +L+F SL
Sbjct: 248 ILGLALGPIRNNDRILYFHSL 268


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 0.97
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 115  QNDWKLDLASDNYFQNPDAYYKDPGKTSVDRKKLEQL 225
            QND+ +D +S + F +   Y       + D+K  E L
Sbjct: 945  QNDYIVDESSSSSFYSSFLYKSSESSCNPDQKPTEYL 981


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 1.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 78  ADYREHGHILLIPER 122
           ADY+  G +LL+P R
Sbjct: 129 ADYKIEGKVLLLPVR 143


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 115 QNDWKLDLASDNYFQNP 165
           +ND KLDL S +  Q P
Sbjct: 325 ENDKKLDLDSIDMMQLP 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,408
Number of Sequences: 438
Number of extensions: 866
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4275738
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)