Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_I09
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    33   0.026
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    27   0.98 
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   2.3  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   2.3  
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    25   5.2  

>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 32.7 bits (71), Expect = 0.026
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 106 IYGVIS**VRGLIYYYESNIPKVETEKIGYHLTSIHHENKKI 231
           +YGV S     L+Y Y+S++P + T+ I   L    H N+KI
Sbjct: 668 VYGVFS--ENWLVYSYQSDVPNLSTKIISVELFEGSHSNEKI 707


>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 27.5 bits (58), Expect = 0.98
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
 Frame = -3

Query: 362 SP*FLKYQILLYHHLWFFHSQGSIYSKQHIAHVNSISVDQNETTIFLFS*CIDVK*YPI- 186
           +P  L+   L +H +        +Y+  H  H+NSISV+ +  T ++ +  + +  + + 
Sbjct: 147 TPSQLRLPRLNHHDMIIAAYPRRVYANAHAYHINSISVNSDAET-YISADDLRINLWNLS 205

Query: 185 FSVSTFGMFDS**YIKPRTYYDITPYITIVE 93
            S  +F + D    IKP    ++T  IT  E
Sbjct: 206 ISDHSFNIVD----IKPENMEELTEVITSAE 232


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 11  VDPRAADRPRLKYID*LKINLTFY 82
           +DP  AD P +K ID + ++ TF+
Sbjct: 715 IDPEFADDPNMKDIDDILLSYTFF 738


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 11  VDPRAADRPRLKYID*LKINLTFY 82
           +DP  AD P +K ID + ++ TF+
Sbjct: 715 IDPEFADDPNMKDIDDILLSYTFF 738


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 73  NILCKPYSTMVIYGVIS**VRGLIYYYESNIPKVETEK 186
           +++    + MV+Y + S   R LI Y   N+P +ET K
Sbjct: 205 HVILSKVAPMVLYPISSTEARILINYPGKNLPPMETLK 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,896,624
Number of Sequences: 5004
Number of extensions: 39410
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)